Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E02
         (1263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    31   2.3  
Z81131-6|CAE17977.2|  734|Caenorhabditis elegans Hypothetical pr...    29   9.2  
Z81131-5|CAB03422.2|  608|Caenorhabditis elegans Hypothetical pr...    29   9.2  
AY241925-2|AAO85273.1|  734|Caenorhabditis elegans chondroitin d...    29   9.2  
AY241925-1|AAO85274.1|  736|Caenorhabditis elegans chondroitin d...    29   9.2  
AB088398-1|BAC76781.1|  715|Caenorhabditis elegans chondroitin s...    29   9.2  
AB088397-1|BAC76780.1|  726|Caenorhabditis elegans chondroitin s...    29   9.2  

>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 22/87 (25%), Positives = 43/87 (49%)
 Frame = +1

Query: 367 FIFITYQFP*PCKSIHKHFDFQVLGAYLFLYRNKTNV*SESLIY*IYFQ**HNLNLQYLK 546
           +IF+ +     C      ++ Q+LGA+LF Y   +    E  +  +YF+      ++ L+
Sbjct: 105 YIFLKHPMNFLCLEDDPFYEEQLLGAFLFRYLPGSLRVKELKLVRLYFE----EIVEILQ 160

Query: 547 LCACINKKSIILSHPRNCHGLYNMFRL 627
             A    + +IL+HP    G+ ++F+L
Sbjct: 161 YFAANFLERVILNHPTEGDGIEDLFQL 187


>Z81131-6|CAE17977.2|  734|Caenorhabditis elegans Hypothetical
           protein T24D1.1b protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 594 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 629


>Z81131-5|CAB03422.2|  608|Caenorhabditis elegans Hypothetical
           protein T24D1.1a protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 468 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 503


>AY241925-2|AAO85273.1|  734|Caenorhabditis elegans chondroitin
           disaccharide polymerase protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 594 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 629


>AY241925-1|AAO85274.1|  736|Caenorhabditis elegans chondroitin
           disaccharide polymerase protein.
          Length = 736

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 596 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 631


>AB088398-1|BAC76781.1|  715|Caenorhabditis elegans chondroitin
           synthase-S protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 575 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 610


>AB088397-1|BAC76780.1|  726|Caenorhabditis elegans chondroitin
           synthase protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 345 SLTSINAKIWSIIIFE*CYHHSWLDN--ITIDIFHF 244
           S T +NA+I+  I+F    H SW +N  +  D FH+
Sbjct: 586 SNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHY 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,916
Number of Sequences: 27780
Number of extensions: 265266
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)