Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E01
         (1256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   9.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   9.5  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 364 KYFTSRKVKRIYDDHGHIAETGKDLCDCLDEKCP 465
           +YF     K  Y D  HI    K+ C C  +K P
Sbjct: 148 EYFEDDYFKNTYFDKTHIDHKCKEHCSCHHDKFP 181


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 322 DQNYLRNASFKKYMLQTQNNIKKIFSSAR 236
           DQNYL N S K      + N +K F SAR
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,828
Number of Sequences: 5004
Number of extensions: 61547
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)