Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D24
         (1363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   156   6e-39
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   156   6e-39
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   156   6e-39
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    84   4e-17

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  156 bits (379), Expect = 6e-39
 Identities = 81/125 (64%), Positives = 89/125 (71%)
 Frame = +3

Query: 162 ARTKQTXRKSTGGKAPSXXXATXAEXKSXXRXGGVKKPHRXRPGTVAVREIRRYQKCTEX 341
           ARTKQT RKSTGGKAP    A+ A  K+    GGVKKPHR RPGTVA+REIRRYQK TE 
Sbjct: 2   ARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 61

Query: 342 IIRKXXLQRLVREIAXDFKSDWGXSLXXSVALQEASEAXLXGLFEDSNLCAIXAKCVTIM 521
           +IRK   QRLVREIA DFK+D         ALQEA EA L  LFED+NLCAI  K VTI 
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQ 121

Query: 522 PKDIE 536
           PKD++
Sbjct: 122 PKDMQ 126


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  156 bits (379), Expect = 6e-39
 Identities = 81/125 (64%), Positives = 89/125 (71%)
 Frame = +3

Query: 162 ARTKQTXRKSTGGKAPSXXXATXAEXKSXXRXGGVKKPHRXRPGTVAVREIRRYQKCTEX 341
           ARTKQT RKSTGGKAP    A+ A  K+    GGVKKPHR RPGTVA+REIRRYQK TE 
Sbjct: 2   ARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 61

Query: 342 IIRKXXLQRLVREIAXDFKSDWGXSLXXSVALQEASEAXLXGLFEDSNLCAIXAKCVTIM 521
           +IRK   QRLVREIA DFK+D         ALQEA EA L  LFED+NLCAI  K VTI 
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQ 121

Query: 522 PKDIE 536
           PKD++
Sbjct: 122 PKDMQ 126


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  156 bits (379), Expect = 6e-39
 Identities = 81/125 (64%), Positives = 89/125 (71%)
 Frame = +3

Query: 162 ARTKQTXRKSTGGKAPSXXXATXAEXKSXXRXGGVKKPHRXRPGTVAVREIRRYQKCTEX 341
           ARTKQT RKSTGGKAP    A+ A  K+    GGVKKPHR RPGTVA+REIRRYQK TE 
Sbjct: 2   ARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 61

Query: 342 IIRKXXLQRLVREIAXDFKSDWGXSLXXSVALQEASEAXLXGLFEDSNLCAIXAKCVTIM 521
           +IRK   QRLVREIA DFK+D         ALQEA EA L  LFED+NLCAI  K VTI 
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQ 121

Query: 522 PKDIE 536
           PKD++
Sbjct: 122 PKDMQ 126


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 6/92 (6%)
 Frame = +3

Query: 279 RXRPGTVAVREIRRYQKCTEXIIRKXXLQRLVREIAXDFKSDWGXSL---XXSVA---LQ 440
           R RPGT A+REIR+YQ+ T+ +I++    R+VREI+ +F +++   +     S A   LQ
Sbjct: 21  RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQ 80

Query: 441 EASEAXLXGLFEDSNLCAIXAKCVTIMPKDIE 536
           EA+EA L  LFED+NLCAI AK VTIM +D++
Sbjct: 81  EAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQ 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,847
Number of Sequences: 5004
Number of extensions: 22476
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 751153284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)