Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D24
         (1363 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     169   2e-43
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       151   6e-38
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   3.8  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  169 bits (410), Expect = 2e-43
 Identities = 88/125 (70%), Positives = 93/125 (74%)
 Frame = +3

Query: 162 ARTKQTXRKSTGGKAPSXXXATXAEXKSXXRXGGVKKPHRXRPGTVAVREIRRYQKCTEX 341
           ARTKQT RKSTGGKAP    AT A  KS    GGVKKPHR RPGTVA+REIRRYQK TE 
Sbjct: 2   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 61

Query: 342 IIRKXXLQRLVREIAXDFKSDWGXSLXXSVALQEASEAXLXGLFEDSNLCAIXAKCVTIM 521
           +IRK   QRLVREIA DFK+D         ALQEASEA L GLFED+NLCAI AK VTIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 522 PKDIE 536
           PKDI+
Sbjct: 122 PKDIQ 126


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  151 bits (365), Expect = 6e-38
 Identities = 78/114 (68%), Positives = 83/114 (72%)
 Frame = +3

Query: 165 RTKQTXRKSTGGKAPSXXXATXAEXKSXXRXGGVKKPHRXRPGTVAVREIRRYQKCTEXI 344
           RTKQT RKSTGGKAP    A  A  KS    GGVKKPHR RPGTVA+REIRRYQK TE +
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 60

Query: 345 IRKXXLQRLVREIAXDFKSDWGXSLXXSVALQEASEAXLXGLFEDSNLCAIXAK 506
           IRK   QRLVREIA DFK+D        +ALQEASEA L GLFED+NLCAI AK
Sbjct: 61  IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 114


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 473 EQAXEXSLACLLXSYRXXQTXTPITFEIX---SDFSHXTL-QXXLTDNXFSTLLITTNFT 306
           + A    L+C   + R  +T T   F +    +DF    L +  L DN  S LL   NF+
Sbjct: 73  DNATAEYLSCYYQNVRGLRTKTK-EFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFS 131

Query: 305 NGHCTRS 285
              C RS
Sbjct: 132 VYRCDRS 138


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,400
Number of Sequences: 2352
Number of extensions: 5502
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 156868470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)