Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D21
         (1267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   276   5e-75
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.59 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   2.4  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   2.4  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   4.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   7.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   7.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   9.6  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  276 bits (676), Expect = 5e-75
 Identities = 127/191 (66%), Positives = 156/191 (81%)
 Frame = +2

Query: 110 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 289
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 290 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 469
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 470 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 649
           + FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180

Query: 650 KPDTKAAQEYF 682
             DTK  ++YF
Sbjct: 181 --DTKNPEKYF 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 580 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 452
           L Q Q L  +    ++ D DL PEV  ++ +EES  G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 506 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 676
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 642 LAPGLQLAGHTSPCLSVNWN 583
           L P  +L  HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 833 VNILNFTLL*KIISFFSIPEEFTFS 759
           + I NF LL +I +FFS+ +E TFS
Sbjct: 397 LRIHNFPLLGRIHNFFSVAKETTFS 421


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 131 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 262
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -2

Query: 321  PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 142
            P TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 872 DMPFSKLHIQ*ILLIFTSLVKSVWINLM 955
           D PFS+LH++ I+ I   L +  W +++
Sbjct: 473 DRPFSRLHVENIIQILRYLPEVKWFDVV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,087
Number of Sequences: 5004
Number of extensions: 61155
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)