Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D20
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    32   0.19 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    30   0.58 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    29   1.3  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   9.4  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +3

Query: 450 IVGSMTIIYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLY 584
           +V   TII  L+ L+++  ++SI  + +I  F+ + +P++C  L+
Sbjct: 391 LVNLYTIIVGLLMLVNVTAISSIFNLAIIAFFISYSLPLVCRLLF 435


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 327 STVQDQEQQVRKVKRTLEGWRVALLSLKSVILWEQ 431
           S +   E++++K +R+ +GW + L  L+S  ++EQ
Sbjct: 24  SAIAATEKELQKAQRSQQGWNIGLFMLQSKDVYEQ 58


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 396 LLSLKSVILWEQQWHPCAIVGSMTIIYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICN 575
           L+  KS    E + H   ++ ++  +     L++ + +   AIV L+L  +D   PVIC 
Sbjct: 536 LIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCLDICGPVICT 595

Query: 576 QLYGS 590
            L+ S
Sbjct: 596 NLFVS 600


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +3

Query: 372 TLEGWRVALLSLKSVILWEQQW-HPCAI----VGSMTIIYLLIWLLDLNTLASIAIVGLI 536
           T   W + L    ++   +Q+W HP  I    V +  I Y+L+W +   +L  +   G +
Sbjct: 333 TFAKWSIPLFLSSALEFAQQRWPHPFLIPSFFVIAPAIFYVLVWAIPGMSLEYLRETGWV 392

Query: 537 LNFVDFMVP 563
            +  +  VP
Sbjct: 393 FSSTETNVP 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,409,915
Number of Sequences: 5004
Number of extensions: 90317
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)