Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D20
         (1240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    31   2.2  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    30   3.9  
AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical ...    29   9.0  
AF016439-3|AAB65899.2|  467|Caenorhabditis elegans Hypothetical ...    29   9.0  

>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 561 PVICNQ--LYGSSSWTGQHEKTFEEICRNIVISYNKLVIYIHSFYSLRDTS 707
           P+ C    + G+  W G H+   +    +I++ YN   +   +F+SLR  S
Sbjct: 245 PIACFNACVNGTYMWFGFHDFPMDSSISSIILKYNIFAVLFITFFSLRPAS 295


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 657 NKLVIYIHSFYSLRDTSPFMYYTISISTL 743
           N+ +I IHSFY L  T  ++ Y+++++ L
Sbjct: 118 NQAMISIHSFYKLNPTGRYILYSLNLTEL 146


>AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical
           protein R02F11.3b protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 501 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRNIVISYNKLVI 671
           NT A +A + L +NF+  +  V+ + L GS S       +  +I   +VIS ++ +I
Sbjct: 189 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 245


>AF016439-3|AAB65899.2|  467|Caenorhabditis elegans Hypothetical
           protein R02F11.3a protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 501 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRNIVISYNKLVI 671
           NT A +A + L +NF+  +  V+ + L GS S       +  +I   +VIS ++ +I
Sbjct: 167 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,368,678
Number of Sequences: 27780
Number of extensions: 497000
Number of successful extensions: 1249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)