Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D20
         (1240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   5.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   5.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.6  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   9.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 957 SPA*LSTRMKHIQIHHVTLT 898
           +PA L+T +K +++HH  LT
Sbjct: 281 APAALTTEVKSVEMHHEALT 300


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 957 SPA*LSTRMKHIQIHHVTL 901
           +PA L+T +K +++HH  L
Sbjct: 224 APAGLTTEVKSVEMHHEAL 242


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 957 SPA*LSTRMKHIQIHHVTL 901
           +PA L+T +K +++HH  L
Sbjct: 281 APAGLTTEVKSVEMHHEAL 299


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 994 YHILYLNLSSLNKPSLTKYTD 932
           +H+  L++ S+N+ S+T   D
Sbjct: 34  FHVTVLSIDSINEESMTYVAD 54


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 715 CITLSPSVHC 744
           C+  SPSVHC
Sbjct: 13  CLICSPSVHC 22


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
            protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 1009 DYKK*YHILYLNLSSLNKPSLTKYTDETYSNTSCYSDLRNG 887
            DYK    +L L +    K ++T Y  +++++  C    +NG
Sbjct: 130  DYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNG 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,985
Number of Sequences: 438
Number of extensions: 6150
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)