Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D18
         (1296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    28   3.2  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    28   3.2  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    27   4.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   9.9  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 324 GEVNTHQCRDRSSCWSWLWRLY 389
           G++  H  R + +C  WLW LY
Sbjct: 271 GDIRPHLFRYQVTCVQWLWELY 292


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 673 AKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVS 795
           A  DGG   +L + A+I    TY+L   S L E+   YPVS
Sbjct: 87  ALADGGPASILIAFAVIG---TYVLFTTSALAELSAIYPVS 124


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 505 YLNHL*HNTAVCTWVLALKMHILRFLEEVYVFSRLFC 395
           Y N L   +A+C W+   + H L+F   V  +S +FC
Sbjct: 329 YTNLLNLRSAICDWLKFSRYHYLKFFTFVEAYS-VFC 364


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 391  HYKINAKKRTLPQENEEYAFLKQAPKYTPQYCVINDSDTSNLSL 522
            H K NA  + L +EN     LK APK T    ++ D    N S+
Sbjct: 1678 HPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSV 1721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,245,803
Number of Sequences: 5004
Number of extensions: 79229
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)