Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D18
         (1296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-4|CAA94368.1|  347|Caenorhabditis elegans Hypothetical pr...   157   2e-38
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    30   4.1  
U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical pr...    29   7.2  

>Z70310-4|CAA94368.1|  347|Caenorhabditis elegans Hypothetical
           protein R11A8.5 protein.
          Length = 347

 Score =  157 bits (381), Expect = 2e-38
 Identities = 80/167 (47%), Positives = 102/167 (61%), Gaps = 1/167 (0%)
 Frame = +1

Query: 487 VINDSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWS-GYKKVP 663
           VIN  D SNL L L+QY TCPFCCKVRA+LD  G SYEVVEV+ V R  IK+S  YKKVP
Sbjct: 55  VINHLDKSNLKLRLYQYETCPFCCKVRAFLDYHGFSYEVVEVNPVTRSQIKFSTTYKKVP 114

Query: 664 IVLAKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNK 843
           I+ +    G   + +ST IIS L TYL      L +II+ YP     N+ GK +    NK
Sbjct: 115 ILRS----GETTMTESTLIISTLATYLQRPDQSLDQIIQMYPAVDSTNEKGKPVLNYPNK 170

Query: 844 YFIMHNSPLSNDXEKSAELEERKWRQWADTVLVHTLSPNVYRTXGEA 984
           +F+M    +  D   ++  EER+WR+W D   +H +SPNVYR   E+
Sbjct: 171 FFVM-KGKVDGDANMASAREEREWREWVDNWFIHLISPNVYRNWNES 216



 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 981  SLXTFKWFEQAGRW-KNRPGXECALMV 1058
            S+ TF+WFEQ G W +  P  E  L V
Sbjct: 216  SVETFRWFEQVGDWHRTFPAWERVLAV 242


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 950 NVCTRTVSAHWRHFRSSNSADFSXSLLN 867
           N C RT+SA + H+    S  +S SLLN
Sbjct: 884 NGCNRTLSARFSHYTQKPSTYYSVSLLN 911


>U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical
           protein C25H3.7b protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 547 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSGYKKVPIVLAKVDGGYQQLLDSTAIIS 726
           P+C K+  +L A  I +EVV     LRQ    S    +P +  +++G  QQ+ DS  I+ 
Sbjct: 57  PYCLKIETFLRANRIKHEVVGTWLTLRQ----SPRGLLPFI--ELNG--QQISDSQVIVW 108

Query: 727 ILETYL-LDKK 756
            L+ +  LD K
Sbjct: 109 KLQKHFDLDDK 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,016,726
Number of Sequences: 27780
Number of extensions: 460333
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)