Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D17
         (1344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.63 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.63 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 1024 GXXPXXPPPPGXXXKKXPPPXXGGGXPPRGXKKXP 1128
            G  P  PPPPG      PPP    G   +   K P
Sbjct: 7    GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 976  GGPXXGPXPXKGXGGGGXXPXXPPPP 1053
            GGP   P P  G  G G  P  PPPP
Sbjct: 759  GGPPP-PPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1045 PPPGXXXKKXPPPXXGGGXPPRGXKKXPGVXPGKXPXGPPXXPP 1176
            P P       P P  GG  PP      PGV  G  P  PP  PP
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPP---PPPPGV-AGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 926 PXXPPXGGGXXPPPPPXXP 870
           P  PP   G  PPPPP  P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/69 (23%), Positives = 20/69 (28%)
 Frame = -3

Query: 1024 PPPXXLXGXGXPXXGPLXXXXFSXXXXXXXXGTPXXPPXGXGXPPPPPXXPRXXXXXXXX 845
            PPP        P   P+     +          P     G G PPPPP  P         
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792

Query: 844  XXXGPKXKP 818
                P+ +P
Sbjct: 793  YAPAPQAEP 801



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 982  PXXGPXPXKGXGGGGXXPXXPPPPGXXXKKXPPP 1083
            P   P P      GG  P  PPPPG      PPP
Sbjct: 746  PAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
 Frame = +1

Query: 1033 PXXPPPP--GXXXKKXPPPXXGGGXPPRGXKKXPGVXPG 1143
            P  PP P  G      PPP   G  PP      P V  G
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +1

Query: 1021 GGXXPXXPPPPGXXXKKXPPPXXGGGXPPRGXKKXPGVXPGKXPXGPPXXPP 1176
            G   P  PP         PP       PP      P   P   P G P  PP
Sbjct: 397  GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
 Frame = +1

Query: 1021 GGXXPXXP--PPPGXXXKKXPPPXXGGGXPPRGXKKXPGVXPGKXPXGPPXXPP 1176
            GG  P  P   PP       PP       PP      P       P GPP  PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.161    0.580 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,704
Number of Sequences: 5004
Number of extensions: 30401
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)