Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D16
         (1306 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X71975-1|CAA50795.1|  239|Drosophila melanogaster GCR 101 protein.     30   8.0  
AY075501-1|AAO39496.1|  299|Drosophila melanogaster RE52135p pro...    30   8.0  
AE013599-3129|AAF46672.1|  237|Drosophila melanogaster CG4038-PA...    30   8.0  

>X71975-1|CAA50795.1|  239|Drosophila melanogaster GCR 101 protein.
          Length = 239

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +3

Query: 546 GGGXGFXXXXGGXXGXPKNGGXTXKKXXXKRGXKGXKTXKGGXXGVFXKG 695
           GGG G     GG  G    GG   +     RG  G     GG  G F +G
Sbjct: 176 GGGFGGRGGRGGGRGGGGRGGGGGRGGGGFRGGAGRNGGGGGGGGGFNRG 225


>AY075501-1|AAO39496.1|  299|Drosophila melanogaster RE52135p
           protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 20/52 (38%), Positives = 21/52 (40%)
 Frame = +3

Query: 546 GGGXGFXXXXGGXXGXPKNGGXTXKKXXXKRGXKGXKTXKGGXXGVFXKGPP 701
           GGG GF    GG  G    GG         RG  G    +GG  G F  GPP
Sbjct: 23  GGGRGFGGGGGGRGGGGGRGGG----GGFGRGGGG----RGGGRGAFDTGPP 66


>AE013599-3129|AAF46672.1|  237|Drosophila melanogaster CG4038-PA
           protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 20/52 (38%), Positives = 21/52 (40%)
 Frame = +3

Query: 546 GGGXGFXXXXGGXXGXPKNGGXTXKKXXXKRGXKGXKTXKGGXXGVFXKGPP 701
           GGG GF    GG  G    GG         RG  G    +GG  G F  GPP
Sbjct: 23  GGGRGFGGGGGGRGGGGGRGGG----GGFGRGGGG----RGGGRGAFDTGPP 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,602,372
Number of Sequences: 53049
Number of extensions: 493038
Number of successful extensions: 1419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7069467435
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)