Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D15
         (1294 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   6.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   8.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -1

Query: 469 PQTTPGTNYHKQLPLWPQRVVSQIQLLSLLPNYRYFFHISQTTSLKYETVL-LR*YLSMF 293
           P TT     H + P   Q  V  +++       R   H+ Q    +Y  +  LR  L+  
Sbjct: 240 PITTCNKKQHLESPSALQAKVDPLKIPEA--EKRKLIHLLQ----EYRCIFSLRPGLTHK 293

Query: 292 ETH*MRLVTRSVHLLNPYPAPLLL 221
            TH ++L  ++  L  PYP P  L
Sbjct: 294 YTHEIKLHDKTPFLKRPYPVPFAL 317


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 744 TCRNNINYTFRNSSLMSQFNSCKCR*WCVFRRLNDTGTPSC 622
           TC    ++  R  + +S  + CK    CV  + N T   +C
Sbjct: 21  TCEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKAC 61


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 422 PKGKLLMVIRSWSGLRIVLVILMEKSYRAHGRISRYF 532
           P G+    ++ W  LR+  +  ++   R H  ++ YF
Sbjct: 350 PLGRRFRALKLWFVLRLYGIENLQAFIRKHVELAHYF 386


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 222  YTVVSWIMNCKHQITFCLNPFSVHIGLIPQ*MQTSALIYVHFLA 91
            Y  + W    K  IT+  +   VHI      ++   L++V F A
Sbjct: 1292 YLHIKWPFGVKTNITYDESTQEVHISKEYLQLEPIGLVFVFFFA 1335


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 222  YTVVSWIMNCKHQITFCLNPFSVHIGLIPQ*MQTSALIYVHFLA 91
            Y  + W    K  IT+  +   VHI      ++   L++V F A
Sbjct: 1292 YLHIKWPFGVKTNITYDESTQEVHISKEYLQLEPIGLVFVFFFA 1335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,139
Number of Sequences: 336
Number of extensions: 5791
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38124331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)