Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_D15
(1294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 253 3e-68
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 236 4e-63
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 170 4e-43
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 142 7e-35
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 124 2e-29
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 85 2e-17
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 54 4e-08
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 2.4
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 28 3.2
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 7.5
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 26 9.8
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 9.8
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 253 bits (620), Expect = 3e-68
Identities = 123/257 (47%), Positives = 175/257 (68%), Gaps = 1/257 (0%)
Frame = +1
Query: 142 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 321
++Y+ G+WV A S F V NP + +A V DM ++ + A+ A AF +++++ KE
Sbjct: 25 RSYIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKE 84
Query: 322 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 501
R ILRRW+DL +N D+LA ++T E+GK L +AKGEV Y F++WFA A I+G+
Sbjct: 85 RYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSS 144
Query: 502 PSPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSALA 681
S P +I+ + P+GVV +ITPWNFP AMITRKVGA +AAGCT VI+P+ +TP +ALA
Sbjct: 145 MSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALA 204
Query: 682 AVELAHQAGVPKGVVNVVTTSRKNAPTV-GKVMCEDEYVRCISFTGSTTVGKILYGLAAK 858
+LA +AGVP GV+N+VT N+P+ G + + +R +SFTGST VGKIL ++
Sbjct: 205 LAKLAERAGVPAGVLNMVTA---NSPSEHGIELTTNPLIRKVSFTGSTNVGKILAKQSSS 261
Query: 859 GIKRVALELGGNAPFXV 909
+K+++LELGGNAPF V
Sbjct: 262 TLKKLSLELGGNAPFIV 278
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 236 bits (578), Expect = 4e-63
Identities = 113/257 (43%), Positives = 173/257 (67%), Gaps = 1/257 (0%)
Frame = +1
Query: 142 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 321
Q++V G+W+ + +N F V NPA ++ +V D+ ++ + A+ A+ AF+T+K+ T +
Sbjct: 19 QSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQ 78
Query: 322 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 501
RS++L RW +L +N D+L +++T E+GKPL++A+ EV + +L+W+A A G++
Sbjct: 79 RSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVA 138
Query: 502 PSPWPNKQILLT-RNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSAL 678
PS ++ L++ + P+GV ++ITPWNFP AMI RK GA +AAGCT + P+ TP L
Sbjct: 139 PSSLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCL 198
Query: 679 AAVELAHQAGVPKGVVNVVTTSRKNAPTVGKVMCEDEYVRCISFTGSTTVGKILYGLAAK 858
V LA +AG P GV+NV+T+S +A GK + + VR +SFTGST VGKIL G +A
Sbjct: 199 GLVRLAQEAGFPDGVLNVITSS--DASAHGKELTTNPIVRKVSFTGSTNVGKILMGQSAS 256
Query: 859 GIKRVALELGGNAPFXV 909
IK+V++ELGGNAPF V
Sbjct: 257 TIKKVSMELGGNAPFIV 273
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 170 bits (413), Expect = 4e-43
Identities = 97/255 (38%), Positives = 140/255 (54%), Gaps = 1/255 (0%)
Frame = +1
Query: 148 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERS 327
Y+NGEW K+ + +P+ + V+A+V K+ A+ +A AF+TWK E+
Sbjct: 24 YINGEWHKSAET--WETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKG 81
Query: 328 RILRRWFDLCEKNTDNLAEVITAESGKPL-AEAKGEVAYGNSFLEWFADSARHINGEIIP 504
+L + +L EK+ D LA + +SGKPL + A+G+V + L + A A I G++IP
Sbjct: 82 ELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIP 141
Query: 505 SPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSALAA 684
+ P K R P+GV I PWN+P M K+ +AAG +IK +E TPLS L
Sbjct: 142 TG-PEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYF 200
Query: 685 VELAHQAGVPKGVVNVVTTSRKNAPTVGKVMCEDEYVRCISFTGSTTVGKILYGLAAKGI 864
L +AG PKGVVN+++ G M + + I+FTGST VG I+ LAA +
Sbjct: 201 ATLVEEAGFPKGVVNIISGL---GTVAGSYMAKHPGIDKIAFTGSTKVGVIVQQLAASNL 257
Query: 865 KRVALELGGNAPFXV 909
K V LE GG +PF V
Sbjct: 258 KAVTLECGGKSPFLV 272
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 142 bits (345), Expect = 7e-35
Identities = 83/256 (32%), Positives = 136/256 (53%), Gaps = 5/256 (1%)
Frame = +1
Query: 148 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQT---WKDTTAK 318
++N + V + V++P+ + ++ EV D D +D A+ A AFQT W+ ++
Sbjct: 26 FINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSA 85
Query: 319 ERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEI 498
+R R L R D E+N + LA + T ++GK + A+G+V ++ A G+
Sbjct: 86 QRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQT 145
Query: 499 IPSPWPNKQILLTRN-PLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSA 675
I + K+ TR+ P+GV I PWNFPF M K+ +A G T ++K +E TPLSA
Sbjct: 146 IETDI--KRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSA 203
Query: 676 LAAVELAHQAGVPKGVVNVVTTSRKNAPTVGKVMCEDEYVRCISFTGSTTVGK-ILYGLA 852
L + + G P GV+NV++ + G + + ++FTGST VG+ ++ A
Sbjct: 204 LCLTKFVPECGFPPGVINVLSGDGRRC---GNAISSHMDIDKVAFTGSTGVGRMVMRAAA 260
Query: 853 AKGIKRVALELGGNAP 900
+ +K+V LELGG +P
Sbjct: 261 SSNLKKVTLELGGKSP 276
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 124 bits (300), Expect = 2e-29
Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 6/265 (2%)
Frame = +1
Query: 139 NQAYVNGEWVKAKSNLVFAVH--NPADDSVVAEVPDMDSKDAQNALLTASNAFQT--WKD 306
N +++G++V + NPA + ++ + +KD +A+ A N F++ W
Sbjct: 21 NSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGIWAK 80
Query: 307 TTAKERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHI 486
K+R +LR+ + + + LA + T GKP A ++ E++A+ A
Sbjct: 81 WPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETD 140
Query: 487 NGEI-IPSPW-PNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSED 660
N + +P P P R P GV+ VITPWNFP M K+ +A+G V+KPSE
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSEL 200
Query: 661 TPLSALAAVELAHQAGVPKGVVNVVTTSRKNAPTVGKVMCEDEYVRCISFTGSTTVGKIL 840
P S L + +AG+P GV+NV+ S K + G + + ++FTGS GK +
Sbjct: 201 APWSCLEFALICKEAGLPDGVLNVIIGSGKES---GAALSCHPKIAYLAFTGSLATGKKI 257
Query: 841 YGLAAKGIKRVALELGGNAPFXVSQ 915
AA+ I + LELGG +P + +
Sbjct: 258 MHAAAENIVPLTLELGGKSPLIICE 282
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 85.4 bits (202), Expect = 2e-17
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 7/239 (2%)
Frame = +1
Query: 205 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRILRRWFDLCEKNTDNLAE 384
P D S++ EV + D +++ A A + WK T+ ER L+ + +N D AE
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 385 VITAESGKPLAEAK-GEVAYGNSFLEWFADSARHINGEIIPSPWPNKQI------LLTRN 543
+ ++GK L +A GE+ + W + + P+ PN + +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQ---SLRPTKRPNSLLTSYKGGYVKYE 126
Query: 544 PLGVVSVITPWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSALAAVELAHQAGVPKGV 723
PLGV++ + WN+P + + + AG V+K SE T S E+ G
Sbjct: 127 PLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVRSLLQSMGH 186
Query: 724 VNVVTTSRKNAPTVGKVMCEDEYVRCISFTGSTTVGKILYGLAAKGIKRVALELGGNAP 900
+ P V + ++ I+F GS + K++ AAK + + LELGG P
Sbjct: 187 SPELVQCITCLPDVADHLTSHSGIKHITFIGSQPIAKLVAASAAKQLTPLCLELGGKDP 245
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 54.0 bits (124), Expect = 4e-08
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 3/218 (1%)
Frame = +1
Query: 220 VVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRILRRWFDLCE-KNTDNLAEVITA 396
VVA +K ++A+ A + W+ +RS I + L K L
Sbjct: 71 VVARYHRAGAKHVEDAIEAALRGKKVWESLPFADRSAIFLKAAHLISTKYRYKLMAATMI 130
Query: 397 ESGKPLAEAKGEVAYGN-SFLEWFADSARHINGEIIPSPWPNKQILLTRNPL-GVVSVIT 570
GK + +A+ + FL + A + P P + PL G V IT
Sbjct: 131 GQGKNIWQAEIDAGMEIIDFLRFNTKYASELYASQPPENTPGVWNRMEYRPLEGFVYAIT 190
Query: 571 PWNFPFAMITRKVGALMAAGCTCVIKPSEDTPLSALAAVELAHQAGVPKGVVNVVTTSRK 750
P+NF A+ A + G ++KPS+ LS+ ++ +AG+P G + +
Sbjct: 191 PFNFT-AIAGNLAAAPLLMGNVVLMKPSDHAVLSSYIVYQIFREAGLPAGALQFIP---G 246
Query: 751 NAPTVGKVMCEDEYVRCISFTGSTTVGKILYGLAAKGI 864
+A V KV + FTGST V + L+G + +
Sbjct: 247 DAVEVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENV 284
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 160 EWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASN 285
E + NL+ AVH AD E PD+D + Q L +N
Sbjct: 565 ELQQQNQNLLSAVHELADRMEKDEKPDLDGAEIQEETLIKAN 606
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 439 YGNSFLEWFADSARHINGEIIPSPWPNKQI 528
+G L FA +A+ +NG I+ +PW +++
Sbjct: 410 HGALILSEFAGAAQSLNGSIVINPWNTEEL 439
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 40 DILYLRTYLLRSGNLVESQKMYI 108
D+ +LR + +R G L E Q +YI
Sbjct: 71 DLHFLRNHFIREGRLSEEQTLYI 93
>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 100 MYINQCRRLHLLRNQAYVNGEWVKAKSNLVFAVHNPADDSV----VAEVPDMDS 249
+Y++ R +LLR+Q V+ ++ + V A N DD V + PDMD+
Sbjct: 112 LYLSSPERQYLLRHQQIVHRHYMDSFLREVPAKMNKLDDKVGNLSMVASPDMDT 165
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 747 STCRNNINYTFRNSSLMSQFNSCKCR*W 664
++ R N+ FRN L+S + SC R W
Sbjct: 266 NSIRRNLTKHFRNRVLVSLYVSCSSRVW 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,448,151
Number of Sequences: 5004
Number of extensions: 93372
Number of successful extensions: 305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -