Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D11
         (1407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    44   5e-05
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   6.2  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +3

Query: 687 LAVQEGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE*Q 815
           L V  G+ PY+GM+TI++ +YP  K+ +L  L +  L+ +E Q
Sbjct: 147 LGVVRGYFPYLGMITIWLTDYPILKYIMLGGLGLLTLIQKEEQ 189



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 605 LTKGDNNSVDDRGLYAQGQLWLTKKD-VVGRARRIF 709
           +TKGDNN +DD  ++ +   +L +++ ++G  R  F
Sbjct: 119 ITKGDNNKIDDVAMFPKSINYLDRENHILGVVRGYF 154


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 935 RNTRENFI*S*KLNTFTEPYNLRRCMYIPALFPT 834
           +NT E  + S  L+TF   +N+   ++ P  FPT
Sbjct: 497 KNTPETSVVSKNLSTFNGKFNVNAPVFTPRSFPT 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,679
Number of Sequences: 5004
Number of extensions: 51106
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 780960954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)