Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D11
         (1407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1125 - 9268507-9268557,9268771-9268828,9268920-9269007,926...    50   4e-06
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    42   0.001
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    30   5.0  

>06_01_1125 -
           9268507-9268557,9268771-9268828,9268920-9269007,
           9269162-9269207,9269304-9269339,9269438-9269509,
           9269946-9270058,9271626-9271740,9273728-9273772
          Length = 207

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 25/55 (45%), Positives = 32/55 (58%)
 Frame = +2

Query: 533 GRXYPELFTEY*NYMKXNNGTVKFLTKGDNNSVDDRGLYAQGQLWLTKKDVVGRA 697
           GR  P +      + +  +  V  LTKGDNN  DDR LYA GQLWL +  ++GRA
Sbjct: 116 GREIPIVHRVIKVHERQESAEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRA 170



 Score = 40.3 bits (90), Expect = 0.004
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 702 GFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 809
           GFLPYVG VTI M E P  K+ ++  L + V+  +E
Sbjct: 172 GFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 207


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 533 GRXYPELFTEY*NYMKXNNGTVKFLTK-----GDNNSVDDRGLYAQGQLWLTKKDVVGRA 697
           GR  P +      + +  +  V  LTK     GDNN  DDR LYA GQLWL +  ++GRA
Sbjct: 357 GREIPIVHRVIKVHEREESAEVDILTKVNCFSGDNNFGDDRLLYAHGQLWLHQHHIMGRA 416



 Score = 40.3 bits (90), Expect = 0.004
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 702 GFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 809
           GFLPYVG VTI M E P  K+ ++  L + V+  +E
Sbjct: 418 GFLPYVGWVTIIMTEKPFIKYLLIGALGLLVITSKE 453


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 644 LYAQGQLWLTKKDVVGRARRIFAIC-WNGYH 733
           LY QGQ W    D + +ARR+  I  W+ +H
Sbjct: 299 LYRQGQCWHDVYDAISQARRLIYITGWSVFH 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,916,981
Number of Sequences: 37544
Number of extensions: 334943
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4443607364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)