Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D11
         (1407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...    62   1e-09
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    29   7.9  

>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = +2

Query: 599 KFLTKGDNNSVDDRGLYAQGQLWLTKKDVVGRAR 700
           K LTKGDNN VDDRGLYA GQLWL++ DVVGR +
Sbjct: 113 KILTKGDNNQVDDRGLYAPGQLWLSRTDVVGRTK 146



 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 25/37 (67%), Positives = 32/37 (86%)
 Frame = +3

Query: 699 EGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 809
           +G LPYVGMVTI MN+YPK K+AVLA L ++VL+H+E
Sbjct: 146 KGLLPYVGMVTIIMNDYPKLKYAVLAFLGLFVLLHKE 182



 Score = 32.7 bits (71), Expect = 0.64
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +1

Query: 511 IVVFKVXGPGXSRIVHRVLKLHEKXQWHSKVLNQ 612
           I VFKV G     IVHRV+K+HEK   ++K+L +
Sbjct: 85  ITVFKVEGREIP-IVHRVIKVHEKSADNTKILTK 117


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 681 MWLAVQEGFLPYVGM-VTIYMNEYPKFKFAVLACLAIYVLV 800
           +WLAV   F+  + + VT   +++ + KFA   CL IY++V
Sbjct: 127 LWLAVAMAFIRRMTLRVTALNSQWQRPKFAWKLCLGIYMVV 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,523
Number of Sequences: 27780
Number of extensions: 296876
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3996164352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)