Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D11
         (1407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   2.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    25   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   6.4  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 601 LYCAIVXFHVVSILCEQ 551
           +YCA+V    V+ILC Q
Sbjct: 12  IYCALVHADTVAILCSQ 28


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 601 LYCAIVXFHVVSILCEQ 551
           +YCA+V    V+ILC Q
Sbjct: 12  IYCALVHADTVAILCSQ 28


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 920 NFI*S*KLNTFTEPYNLRRCMYIPALFPTLQILALL 813
           N+I   + NTFT+  NL R      +  T+++ +LL
Sbjct: 627 NYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLL 662


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 634 INTIIVTFG*ELYCAIVXFHVVSIL 560
           +  +++ FG ++ C IV   +VSI+
Sbjct: 390 VKLVLLNFGWQMICLIVVIALVSII 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,131
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48985704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)