Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D10
         (1316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    69   1e-12
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    28   3.3  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   5.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   7.6  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 55/192 (28%), Positives = 75/192 (39%), Gaps = 13/192 (6%)
 Frame = +1

Query: 424 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 573
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 574 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARY 753
           W + DDP  +H   +P CP+     Y  +              +   Q P+       R 
Sbjct: 78  WEDDDDPLKEHITHSPSCPWA----YILS------------SKNNPNQNPQAAALTKCRE 121

Query: 754 STEAARLATFKDWPRCMRQKPEELAEAGFFYTGQG---DKTKCFYCDGGLKDWESDDVPW 924
            T   ++  + + P     +P  +A +GF Y       D   C YCD  L DWE DD P+
Sbjct: 122 QTFVDKVWPYTNRPD-YHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPY 180

Query: 925 XQHARWXDXCAY 960
            +H R    C +
Sbjct: 181 TEHKRRRADCVF 192



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
 Frame = +1

Query: 769 RLATF--KDWPRCMRQKPEELAEAGFFYTGQG--------DKTKCFYCDGGLKDWESDDV 918
           RL TF  K WPR  +  PE LA  GF+Y            D   C+ C     DWE DD 
Sbjct: 25  RLDTFQKKKWPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDD 83

Query: 919 PWXQHARWXDXCAYVQLVKXRD 984
           P  +H      C +  ++  ++
Sbjct: 84  PLKEHITHSPSCPWAYILSSKN 105


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 783 QGLAEMYAPKTRGTGRGRILL 845
           QG+ ++  PK RG+G GR+L+
Sbjct: 300 QGILKVNVPKQRGSGSGRLLM 320


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 666 SPSVGIHLFSYKGTLGRPSPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVAGQLF 490
           +P+V  ++++Y G+      ++ S I   +P   +Y+     H   + +   SVA Q+F
Sbjct: 104 NPTVRDNVYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIF 162


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 628 PFVRKQMYANAGGEAAAVGRDECGA-SAATQPPRMPGPVHARYSTEAAR 771
           PF R Q++ANAGG +     + CG   +    P +   +   Y+T AAR
Sbjct: 398 PF-RLQLFANAGGLSNLTSPNPCGTYKSILSKPCISTGLGLVYATPAAR 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,085,108
Number of Sequences: 5004
Number of extensions: 77851
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)