Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D10
         (1316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22...    32   1.2  
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    32   1.2  
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    30   3.5  
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    30   4.7  
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396...    29   8.2  

>12_01_0027 -
           225670-225870,225989-226126,226315-226392,226523-226708,
           226853-226945,227797-227863,228660-228964
          Length = 355

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 540 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 391
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H   +V  VV
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 335


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 540 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 391
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H   +V  VV
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 334


>04_04_1073 -
           30606472-30606515,30606897-30606988,30607152-30607243,
           30607362-30607469,30607614-30607748,30607826-30607871,
           30608320-30608420,30608512-30608649,30608721-30608819,
           30608920-30609036,30609941-30610102,30610271-30610330,
           30611120-30611216,30611238-30611296,30611364-30611480,
           30611922-30612020,30612115-30612180,30612405-30612542,
           30612659-30612742,30612820-30612892,30612937-30612992,
           30613074-30613182,30613253-30613335,30613406-30613489,
           30613679-30613750,30613827-30613904,30613984-30614067,
           30614142-30614212,30614497-30614566,30614866-30614955,
           30615046-30615177,30615250-30615350,30615634-30615691,
           30615762-30615878,30617981-30618133
          Length = 1094

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -1

Query: 266 ITNVAAAPFLATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQN 87
           I  VAAA  LA  + + GI   ++  A   ++ + V  +T     + S++FQN+N  +QN
Sbjct: 201 ILMVAAAVSLALGITTEGIKEGWYDGASIAFAVLLVVVVTATSDYKQSLQFQNLNEEKQN 260


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 604 HRRWAPQCPFVRKQMYANAGGEAAAVGRDECGASAAT 714
           HR  +P+CP   +++  N+  +   +G   C A A+T
Sbjct: 862 HRATSPKCPLNSQKIMKNSDKQGRPLGSTSCAAGAST 898


>07_03_1174 +
           24538522-24538682,24539229-24539430,24539529-24539675,
           24539832-24539944,24540580-24540791,24541194-24541258,
           24541581-24541751,24542543-24542887,24542980-24543173,
           24543292-24543448,24543946-24544010,24544166-24544331
          Length = 665

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 835 GFFYTGQGDKTKCFYCDGGLKDWESDDVPWXQHARWXD 948
           G FY  +GD + CF  +G  K + + +VPW +H +  D
Sbjct: 212 GSFYPAEGDASYCFIGEGDGKGY-NINVPW-EHGKCGD 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,284,531
Number of Sequences: 37544
Number of extensions: 580847
Number of successful extensions: 1644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4120436808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)