Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D09
         (1299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    28   3.2  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   4.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   9.9  

>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +1

Query: 13  SYREFLXLSFLXPFGRXHPELCVXSFSNL--PASLPTGPPVFVLQRITQFAPGPGSHFV 183
           SY  FL      P  R   +L V S   L  P +    P   V  RI    PGPG H++
Sbjct: 68  SYNAFLHWMSTVP-KRYSNQLAVESNRQLKMPQNAREKPDKQVANRIFSLVPGPGKHYI 125


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 550 VKTLAYDTLDANKRFFDNDISKVPRQALTVG 642
           ++TL+Y  +   K  FD DISK  RQ L VG
Sbjct: 1   METLSYSQIKKRKADFDEDISKRARQ-LPVG 30


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 305 RPTYS-SMLKVVTYLKDNFPSLWNXINRLYMPRGXPPV 195
           R  YS S++++   LK ++  L    +  + PRG PPV
Sbjct: 410 RSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,220,254
Number of Sequences: 5004
Number of extensions: 82936
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)