Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_D09
(1299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 35 0.12
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 34 0.28
02_05_0107 + 25897487-25898059 32 0.86
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569... 32 1.1
10_01_0355 + 3912019-3913046,3914354-3914678 32 1.1
02_05_0584 - 30135768-30135790,30136104-30136866 31 2.0
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 29 8.0
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 29 8.0
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 35.1 bits (77), Expect = 0.12
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 484 GIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGTVMDA 663
G+GPDGHIA PG LV+ + K + Y D K P + +T + +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK-KWVTY----------IKDSPKPPPERITFTFPVINSS 234
Query: 664 KEVMILITGVHKSLALAKAVEE 729
V +++TG K+ A+ KA+ +
Sbjct: 235 AYVAMVVTGAGKAGAVQKALSD 256
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 33.9 bits (74), Expect = 0.28
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +1
Query: 472 LFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGT 651
L + G+GPDGH+A PG +V+ +K ++Y D K P + +T
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVNE-NLKWVSY----------IKDSPKPPPERITFTFPL 400
Query: 652 VMDAKEVMILITGVHKSLALAKAVEE 729
V + + +++TG K+ A+ KA +
Sbjct: 401 VNSSAHIALVVTGAGKAGAVHKAFSD 426
>02_05_0107 + 25897487-25898059
Length = 190
Score = 32.3 bits (70), Expect = 0.86
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 453 GGWRSAFVHRRYRSGRSH-RVQ--------RTGLLAGVSDASEDPGLRHPGRQQAVL*QR 605
G WR A HRR R GR + R+Q R+ LLA S + P P +QQ V+
Sbjct: 17 GLWRWALCHRRRRRGRGYLRLQPCPGAAGGRSPLLAAGSVKKQPP----PPQQQIVV--- 69
Query: 606 HQQGAPTGAHRWSRNCYGR*R 668
HQ+G +W R+ R R
Sbjct: 70 HQRGGEKAVLKWGRSLARRMR 90
>10_08_0948 +
21754985-21755290,21756042-21756297,21756845-21756999,
21757077-21757349,21757582-21757776,21757867-21758058
Length = 458
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 691 VHKSLALAKAVEEGVNHMWTVSAFQQHPQALFVCDEDATLELRVKTVKYFKSLMAEHNKL 870
+ K A KA++EG V + + + +V +++ +E++ +T K K+L A N L
Sbjct: 164 IGKQGASIKAIQEGTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHL 223
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 482 PMNKCTPPASCMSFSKR*HSSTKSDALPSSTCALLGSMSMCLKNSFH 342
P+N P +SF ++ +S A PS+TC+LLG + L S H
Sbjct: 58 PINPTAGPGPSLSFYSLSSAALRSVAAPSATCSLLGHTNSHLLFSDH 104
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 731 PSSTALASAKDLCTPVMRIMTS---LASITVPTPTVSACRG 618
PSS A K+ TP+M +M L + VPTP + C G
Sbjct: 161 PSSPAQPQPKECMTPLMSVMPCADYLTNTAVPTPPATCCDG 201
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 752 TVHMWFTPSSTALASAKDLCTPVMRIMTSLASITVPTPTVSACRGTLLMS 603
TV +W SST + D T +R++ +L + + P T+ R LL +
Sbjct: 455 TVKLWDVASSTKVLKTDDTSTNRLRMLKTLRTKSTPVYTLRFSRRNLLFA 504
>02_03_0226 -
16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 29.1 bits (62), Expect = 8.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 890 SHCFASISLLCSAIKLLKYL 831
+HC + ++CS+IK +KYL
Sbjct: 813 THCIGDVMMVCSSIKAVKYL 832
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,143,246
Number of Sequences: 37544
Number of extensions: 709902
Number of successful extensions: 2527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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