Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D07
         (1287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...   191   2e-49
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...   148   2e-36
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...   102   1e-22
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    42   2e-04
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    30   0.60 
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   5.6  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   9.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   9.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  

>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score =  191 bits (466), Expect = 2e-49
 Identities = 85/147 (57%), Positives = 116/147 (78%)
 Frame = +2

Query: 203 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKR 382
           ++F LL SRQGK+RL KW+     K + KI R++ + V+ RKPKMC+F+E+K  K+VY+R
Sbjct: 3   IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62

Query: 383 YASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 562
           YASL+F C +EQ+DNEL+ LE+IH++VE LDKYFG+VCELD+IFNFEKAY++++EL+L G
Sbjct: 63  YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122

Query: 563 ELQETSKKNVLKAIAAQDLLQEEETPQ 643
           ELQE+SK NVL A+ A D   E +  Q
Sbjct: 123 ELQESSKTNVLSAVLAGDAESEADAQQ 149


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  148 bits (358), Expect = 2e-36
 Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
 Frame = +2

Query: 200 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKM-CSFLEWKDVKVVY 376
           M+QF+L+ +R GK RL K+YV   D  K ++   +   +  R  K   +FLEW++ K+VY
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60

Query: 377 KRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVL 556
           +RYA LYFC  ++  DN+L  LE+IH +VE+LD +FG+VCELD+IFNF K   ILDE++L
Sbjct: 61  RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120

Query: 557 GGELQETSKKNVLKAIAAQDLLQ 625
           GGE+ E++KK+VL+ I A + L+
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score =  102 bits (244), Expect = 1e-22
 Identities = 49/142 (34%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
 Frame = +2

Query: 200 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDV----K 367
           M+  + +F+ +GK RL K+Y    + +++K+  ++   V  R P  C+FLE   +    +
Sbjct: 1   MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60

Query: 368 VVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE 547
           ++Y++YA+LYF   +++ ++EL  L+LI  +VE LD+ F +VCELD++F F++ + IL E
Sbjct: 61  IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120

Query: 548 LVLGGELQETSKKNVLKAIAAQ 613
           +V GG + ET+   ++ A   Q
Sbjct: 121 VVSGGLVLETNLNEIVLAAQNQ 142


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 28/136 (20%), Positives = 59/136 (43%)
 Frame = +2

Query: 200 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 379
           M+  + +F+ +G   + K +  H   LKK +T      +L         +       +Y 
Sbjct: 1   MISGLFIFNLKGDTLICKTF-RHD--LKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYT 57

Query: 380 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 559
           ++  LY     +   N ++ LE +   ++ L  YFG + E  +  N    + +LDE++  
Sbjct: 58  KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDY 117

Query: 560 GELQETSKKNVLKAIA 607
           G +Q T    + ++++
Sbjct: 118 GIIQTTEPDALARSVS 133


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +2

Query: 347 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 526
           L  + +  +Y  +  +Y     +   + +  L  + +  ++   YF  + E  I  NF  
Sbjct: 50  LTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVL 109

Query: 527 AYFILDELVLGGELQETSKK 586
            Y +LDE++  G  Q T  K
Sbjct: 110 VYELLDEIMDFGFPQTTETK 129


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 488 SVCELDIIFNFEKAYFILDELVLGGEL 568
           ++ ++++ +N E  +FI +E+V GG+L
Sbjct: 217 NIIKVNMEYNSETQFFIFEEMVTGGDL 243


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 473 DKYFGSVCELDIIFNFEKAYFILDELV-LGGELQETSKKNVLKAIAAQDLLQEEETPQGF 649
           D Y G +C   + + FE    +++ L+    +L+ TSK N  + +    ++         
Sbjct: 29  DAYMG-LCN-SLTYRFEGWRHLVENLIAFFKQLESTSKNNAKEYMKLSKVIVHPYKDANV 86

Query: 650 FEDHGL 667
           FE+HG+
Sbjct: 87  FEEHGI 92


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 TSSLTLRKLTSYLMNWFLVESYKKPVRRM 590
           T  LT+++  S L+NW LV  Y K   R+
Sbjct: 562 TELLTIKQPKSSLLNWGLVNGYPKTEGRI 590


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -1

Query: 1218 GXXPXPPXPGXGXGGXXXGPXXXPXXGXGXXXXNPPXP 1105
            G  P PP PG    G    P   P    G      P P
Sbjct: 760  GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,009,915
Number of Sequences: 5004
Number of extensions: 73111
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)