Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D06
         (1181 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.4  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 270 DNFDEDEEKAFKTAPVGKGGRHLSIPFDSTMTNGDLAKKQNGSAV-RTNSLGSG 428
           D F  + ++   T         ++IPF+ T  N DL + Q G  + + N  G G
Sbjct: 528 DKFTVNLKQGQNTITRASSQSSVTIPFERTFRNLDLNRPQGGEELAQFNFCGCG 581


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 588 LVQKGILLPESPVTPVPEANEELSPVYGGEXARAET 695
           L +K  + P +P TP P   E L+P       R  T
Sbjct: 87  LAEKVSVSPTTPPTPSPPPEERLTPSKDASSKRIXT 122


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 FIIVTSHLKSCISIVNVIFNITFMIYLEH 126
           FII T HL  C + +    ++ F++ L++
Sbjct: 173 FIIFTMHLLFCCAFIFFNMHLLFLLCLDY 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,582
Number of Sequences: 336
Number of extensions: 3261
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34537495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)