Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D06
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   1.7  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   1.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.8  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   8.9  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 138 NHKCDIKNYVNYRDTTF*MASDNDKSSDYNFDGSLKNINKKGNNDNFDEDEEKAF 302
           N   +I N  N+         DND  +D + D    N N   NN N D+D++ A+
Sbjct: 511 NSSSNISNVANFDSAE----DDNDNDNDNDRDS---NNNNNNNNTNTDDDDKLAY 558


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 138 NHKCDIKNYVNYRDTTF*MASDNDKSSDYNFDGSLKNINKKGNNDNFDEDEEKAF 302
           N   +I N  N+         DND  +D + D    N N   NN N D+D++ A+
Sbjct: 511 NSSSNISNVANFDSAE----DDNDNDNDNDRDS---NNNNNNNNTNTDDDDKLAY 558


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 552 ERKISVRANRDELVQKG---ILLPESPVTPVPEANEELSPV 665
           E K S +++ D + Q G      P+  V+P PEA +E S V
Sbjct: 448 EDKKSTKSSSDNIAQSGPRSSYFPKKTVSPKPEAKKEASKV 488


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 460 DLVRSAGGVLAPDPRLFVRTAEPFCFFARSPFVIVESKGID 338
           DLVR  GG + P   +     E   F   S FVI+  +GID
Sbjct: 148 DLVRGKGGKVLPLSTI----PESILFLNESSFVIMSRRGID 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,435
Number of Sequences: 5004
Number of extensions: 49641
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)