Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D06
         (1181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.98 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   9.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 459 TWSVPRAASSHQTQGYSFAPPNHSVSLPDRHSS*SSQKVLINVDRLFQ 316
           T S  R  +S+ T   SF PP  + SL +RH+    +K+++   R F+
Sbjct: 617 TSSASRENTSNTTSMESFKPPTLTESLLNRHNE-DMEKLMMLKHREFR 663


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 615 ESPVTPVPEANEELSPVYGGEXARAETNCGPD 710
           E+PVT   E         G       TNCGP+
Sbjct: 402 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPN 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 615 ESPVTPVPEANEELSPVYGGEXARAETNCGPD 710
           E+PVT   E         G       TNCGP+
Sbjct: 422 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPN 453


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 615 ESPVTPVPEANEELSPVYGGEXARAETNCGPD 710
           E+PVT   E         G       TNCGP+
Sbjct: 371 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPN 402


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 457 LVRSAGGVLAPDPRLFVRTA 398
           +VR+  G+   DP LFV T+
Sbjct: 389 MVRTCNGLELRDPSLFVETS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,217
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)