Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D03
         (1404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.38 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   5.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 980 PPXXGXGGXXPXPXXTPXGGXGXXXPPPPP 891
           PP    GG  P P      G G   PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 922  PPXGVXFGXGXXPPXPXXGGXXAPPPP 1002
            PP  +  G    PP P   G   PPPP
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 916  PXPPXGVXFGXGXXPPXPXXGGXXAPPPP 1002
            P PP     G    PP P       PPPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 599 PPPXGXXPXGPPAXXXPPP 543
           PPP G    GPP    PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 24.6 bits (51), Expect(2) = 3.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 437 PPXXAXXPXPPPPXXPVNXARGG 369
           PP  A    PPPP  P   + GG
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 21.4 bits (43), Expect(2) = 3.4
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = -2

Query: 608 TAXPPPXGXXPXGPPAXXXPPPXDP 534
           T  P P    P  P     PPP  P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
 Frame = -2

Query: 671 PPXARXXEKGXXGXGXQXXXXTAXPPPX-----GXXPXGPPAXXXPPPXDPRD-XXXGRX 510
           PP  R   K   G G         PPP      G  P  P     PPP  PR     GR 
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375

Query: 509 XKXRTRXR-XAGPXARTPE*XGXGXP--------PXXAXXPXPPPPXXP 390
               +  R  + P A  P   G   P           +  P P PP  P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 437  PPXXAXXPXPPPPXXPVNXA 378
            PP  A  P  PPP  P + A
Sbjct: 1721 PPMPAGPPSAPPPPLPASSA 1740



 Score = 21.4 bits (43), Expect(2) = 5.5
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -2

Query: 605  AXPPPXGXXPXGPPAXXXPPPXDP 534
            A P      P  PP    PPP  P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAP 1721


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 416 PXPPPPXXPVNXARGGK 366
           P PPPP  P+  A GGK
Sbjct: 945 PPPPPPPPPLVSAAGGK 961


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,372
Number of Sequences: 5004
Number of extensions: 20194
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 778973776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)