Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D02
         (1243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    62   2e-10
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    28   3.1  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   5.4  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   7.1  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 52/183 (28%), Positives = 71/183 (38%), Gaps = 13/183 (7%)
 Frame = +1

Query: 451 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 600
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 601 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARY 780
           W + DDP  +H   +P CP+     Y  +              +   Q P+       R 
Sbjct: 78  WEDDDDPLKEHITHSPSCPWA----YILS------------SKNNPNQNPQAAALTKCRE 121

Query: 781 STEAARLATFKDWPRCMRQKPEELAEAGFFYTGQG---DKTKCFYXDGGLKDWESDDVPW 951
            T   ++  + + P     +P  +A +GF Y       D   C Y D  L DWE DD P+
Sbjct: 122 QTFVDKVWPYTNRPD-YHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPY 180

Query: 952 EQH 960
            +H
Sbjct: 181 TEH 183



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 514 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 660
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 810 QGLAEMYAPKTRGTGRGRILL 872
           QG+ ++  PK RG+G GR+L+
Sbjct: 300 QGILKVNVPKQRGSGSGRLLM 320


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 693 SPSVGIHLFSYKGTLGRPSPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVAGQLF 517
           +P+V  ++++Y G+      ++ S I   +P   +Y+     H   + +   SVA Q+F
Sbjct: 104 NPTVRDNVYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIF 162


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 655 PFVRKQMYANAGGEAAAVGRDECGA-SAATQPPRMPGPVHARYSTEAAR 798
           PF R Q++ANAGG +     + CG   +    P +   +   Y+T AAR
Sbjct: 398 PF-RLQLFANAGGLSNLTSPNPCGTYKSILSKPCISTGLGLVYATPAAR 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,125,058
Number of Sequences: 5004
Number of extensions: 78166
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)