Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D02
         (1243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   7.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   7.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   9.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 662 YENKCMPTLGERRPLSVETNV 724
           YEN  +PT G+  P  V+TN+
Sbjct: 48  YENNQLPTHGKGTPTVVKTNI 68


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 28  LDSGIWNRTPPXCKLPXSFMIVFSTIH 108
           LDSGI N T P C  P   +   +T H
Sbjct: 142 LDSGIINNTQPMCS-PKLHVFDLNTSH 167


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 28  LDSGIWNRTPPXC 66
           LDSG+ NRT P C
Sbjct: 139 LDSGLVNRTVPVC 151


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 478 SDVPLHDACR 449
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 190 ITKMNQENESTEVNSENIASTSGVAKNGAAATLVMLKNARDAK 318
           ITK    NES  +    I +  G   +G    L  L+N   AK
Sbjct: 130 ITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAK 172


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 478 SDVPLHDACR 449
           SD+PLHDA R
Sbjct: 411 SDIPLHDATR 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 478 SDVPLHDACR 449
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 28  LDSGIWNRTPPXCKLPXSFMIVFST 102
           LDSG+ N T P C  P  F    +T
Sbjct: 143 LDSGLVNNTQPMCS-PKLFAFDLNT 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,402
Number of Sequences: 438
Number of extensions: 5831
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42382239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)