Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D01
         (1221 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   6.1  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    22   8.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 410 FPHPKSMMGLFLSTPQSQIHLITRRALSSPNQTSPVSPNSSK 285
           +  P++    F STP           L+ PN    VSP S K
Sbjct: 80  YQSPQTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEK 121


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 767 NFIFSEKCLTNSSSVQ 720
           N+++S KC  NS+ V+
Sbjct: 165 NYVYSSKCENNSTGVE 180


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 360 RLRGGQKQSHHRLRVWKRLHTI*ISKRRIHKSTRSG 467
           RLR     S H LR  K++H    +   IH+ T  G
Sbjct: 53  RLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQG 88


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 LQNQTLVEIMDETELDPSVLG 240
           +QNQ LV   DE  + P V+G
Sbjct: 27  VQNQPLVIGCDEKHVSPHVIG 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,862
Number of Sequences: 336
Number of extensions: 5423
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35658067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)