Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_D01
         (1221 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    27   0.44 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    27   0.44 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.44 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    27   0.44 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    27   0.44 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    27   0.44 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    27   0.44 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.77 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   1.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   1.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   7.1  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR  VW
Sbjct: 23  NKIDLRSRTKEERLQHRREVW 43


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 467 STPSRFVNPSFANSDSV*PFPHPKSMMGLFLSTPQSQIHLITRRALSSPNQTSPV 303
           S P+  ++P      S   FP   S+  +  ++PQSQ  + T R   SP++TSP+
Sbjct: 373 SEPTERISPYGYPIGSGGSFP---SLYPMATTSPQSQSTIQTLRPQVSPDRTSPM 424


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR   W
Sbjct: 23  NKIDLRSRTKEERLQHRREAW 43


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  HR   W
Sbjct: 23  NKIDLRSRTKEERLQHRREAW 43


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           +K+DLR R  +++  HR  VW
Sbjct: 23  SKIDLRSRTKEERLQHRREVW 43


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           N++DLR R  +++  HR   W
Sbjct: 23  NEIDLRSRTKEERLQHRREAW 43


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 537  LIVDEGIILFGNFSG*SNGS 478
            L++++GI   G+ SG SNGS
Sbjct: 1060 LVLEDGITSSGSDSGSSNGS 1079


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 NKVDLRLRGGQKQSHHRLRVW 407
           NK+DLR R  +++  +R   W
Sbjct: 23  NKIDLRSRTKEERLQYRREAW 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,438
Number of Sequences: 438
Number of extensions: 6866
Number of successful extensions: 34
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41541798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)