Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C22
         (1259 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   3.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.6  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   4.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 737 ELARTPHRL*C*QRTWSLLQLSRSHWSSGLSPSRRQRPA 621
           EL R  H +    R  S + L  S+W   LSP  RQ  A
Sbjct: 380 ELLRRFHEI----RYMSTIDLRSSYWQIPLSPESRQYTA 414


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 527 PEDSKRPVAEPTETTPTNVSREEMEFTTESNVRDVDVGLETAQKTNE 667
           PE    P  +PT+TT +  + +  E  TES+        +T +  NE
Sbjct: 393 PEPVPTPEPQPTQTTESEPT-QASEQPTESSTTQKPQTTKTPESGNE 438


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 440 NLPWDVNSEGSWV 478
           N  WDV+S GSW+
Sbjct: 187 NAWWDVHSTGSWL 199


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 236 EMQHLDDMMKELSLKFPSI-INEGRVEGD 319
           EM++L+ ++KE    +PS+ + E R+E D
Sbjct: 43  EMKYLEMVLKEAQRLYPSVPVIERRLEVD 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,287
Number of Sequences: 336
Number of extensions: 4008
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36993960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)