Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C22
         (1259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.47 
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    31   1.4  
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    31   1.4  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    31   2.5  
08_02_1129 - 24513568-24514296,24515380-24515817                       30   3.3  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    30   4.4  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 278 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 376
           K   ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 615 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSS 728
           A C   TS+ R+ RRPMR+    +R RT S++ T R S
Sbjct: 40  ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +2

Query: 116 PRHSTTMARHIGRITITTP--FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPS 289
           P+ S+T    +G   I  P  F P   +  L  H  WS L+  + H+        L F  
Sbjct: 303 PQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGSWSFLS--IAHI--------LCF-- 350

Query: 290 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 448
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
            30208517-30208676,30208768-30208844,30208985-30209032,
            30209504-30209594,30209703-30210004,30210214-30210495,
            30210695-30211011,30211113-30211273,30211556-30211665,
            30211752-30211902,30212438-30212578,30212688-30212857,
            30213485-30213817,30213981-30214271,30214356-30214439,
            30214620-30214753,30214946-30215173,30215273-30215444,
            30215621-30215875,30215963-30216232
          Length = 1509

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 681  TAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVG 571
            TA  +  +FW V     +S+ LL ++ S+ + + FVG
Sbjct: 1263 TALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVG 1299


>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 659 SSGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 537
           +S +SP   QR A CSRW  PS   L +  +   A+QL  C
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 537 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMR 668
           A G+   P   P     V   SS PR  C  LTS +R+P  P R
Sbjct: 5   AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,428,581
Number of Sequences: 37544
Number of extensions: 484585
Number of successful extensions: 1517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)