Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C19
(1276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 78 2e-15
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 37 0.005
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 34 0.037
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 32 0.15
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 1.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 1.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 4.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 4.2
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 27 5.5
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 27 5.5
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 9.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 9.7
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 78.2 bits (184), Expect = 2e-15
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 2/195 (1%)
Frame = +3
Query: 342 LMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGV 521
L I + CL V V FY + R L F ++ S++LL+Q T C ++ GF GV
Sbjct: 163 LGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCLLVMLGFGFGV 222
Query: 522 DQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLL-LSYYNNAYSIILFIP 698
E+ + IG I GV S ++ S+ K YV++ L L Y +A + +
Sbjct: 223 RFESHVAP---IGIILGVWSSFTTAIESVAVKH---YVHEYPTLDLIYIFSALMSVFCLL 276
Query: 699 LMLINGEMT-VLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHNISGTAK 875
L + + E+ + Q+ F+ +++ L F + T QIKVTSP+T+ IS +A+
Sbjct: 277 LSVASLELLHTVQEVVGMQAIKFFIVLILSSLSNFYLNIATFTQIKVTSPVTYMISVSAR 336
Query: 876 AGAXTVIATQWYNES 920
+ T++A + E+
Sbjct: 337 SILQTLLAVAFLGET 351
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 37.1 bits (82), Expect = 0.005
Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 6/265 (2%)
Frame = +3
Query: 141 NKXLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKKVI 320
NK +FS + + PLF++ Q ++ F P K ++ +
Sbjct: 71 NKWIFSESKMDFQFPLFLSSCQMLVQMG--FAKLTILAFPRYQPNKKDNFSWLEYFYRAG 128
Query: 321 PLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFII 500
A++ L I +N L+ + + FY + RS +F FS ++ R +LC +I
Sbjct: 129 ICALVTGLDIGLSNASLETITLSFYTMCRSSILIFVFFFS-VIFRIEMFDWILLCITLVI 187
Query: 501 -FGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVL---PYVNQEVLLLSYYN 668
G L V E F L G + + S++ L T+K+L P+ + L
Sbjct: 188 SAGVVLMVATET---QFVLSGFLLVMASSVLSGLRWALTQKLLLDHPWTSNPFTSLFALT 244
Query: 669 NAYSIILFIPLMLINGEMTVLMN--YTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTS 842
+ L + ++ G + + + + F +V G L F + L I+ TS
Sbjct: 245 PLMFLFLLVAGLIFEGPVRFIESPAWKEFGPFMSVVILVPGTLAFFMVASEFGL-IQKTS 303
Query: 843 PLTHNISGTAKAGAXTVIATQWYNE 917
+T ++ G K + +T +Y++
Sbjct: 304 IVTLSVCGILKEIITIIASTLFYHD 328
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.037
Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Frame = +3
Query: 303 VMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCIL 482
V+ +PL+I +L + V + ++L+ +F V+ + R S+
Sbjct: 69 VLYTTLPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYF 128
Query: 483 CCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEV----- 647
+ FG L E S ++G +Y ++ + + +IF K+
Sbjct: 129 SLVPLTFGVTLACSFEL---SADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKK 185
Query: 648 ----LLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYC 815
L L Y++ + I+ IP+ L L + + ++ GL F
Sbjct: 186 HYNKLNLLLYSSGVAFIVMIPVWLYQEGFAYLPEV----GSPVFLNLIYNGLSHFFQNIL 241
Query: 816 TSLQIKVTSPLTHNISGTAKAGAXTVIATQWYNES 920
+ + SP+ ++I+ K V++ W+ ++
Sbjct: 242 AFTLLSIISPVAYSIASLIKRIFVIVVSIIWFQQA 276
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 32.3 bits (70), Expect = 0.15
Identities = 12/53 (22%), Positives = 33/53 (62%)
Frame = +3
Query: 582 SLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNY 740
+L + ++ K+V+P++ + LL+ + +AY+ + L+ +NG T+++++
Sbjct: 245 NLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYNSHHAVSLLALNGLFTLMISH 297
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 324 LAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVV 434
L+I YT+ N+C+K G+ FYY S +F+VV
Sbjct: 1307 LSICYTI-----NICVKVYGLSFYYFFHSFWNMFDVV 1338
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 522 DQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPY 632
DQ L+ + SLI G+V SL++SL+ ++ PY
Sbjct: 96 DQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPNFPY 132
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 450 LRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSL 587
L C+ CCA Y ++LLG S + T+YGV +L
Sbjct: 1555 LASEMDGECV-CCASFANCVYCSRCSDSLLGEESTVSTMYGVKPTL 1599
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 450 LRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSL 587
L C+ CCA Y ++LLG S + T+YGV +L
Sbjct: 1555 LASEMDGECV-CCASFANCVYCSRCSDSLLGEESTVSTMYGVKPTL 1599
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 677 LHNT--FHTANVNQRRNDSFDELH*FP 751
LHN+ FH + Q+ ND+F LH P
Sbjct: 75 LHNSIIFHILKLMQKNNDTFSALHHLP 101
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 471 RCILCCAFII-FGFYLGVDQENLLGSFSLIGTIYGVVGSL--MLSLYSIFTKKVLPYVNQ 641
RCI C I F LG + L+ SL+G L ++ ++SIF ++LPY+
Sbjct: 139 RCICACEAISDFEELLGNMRIGLIIDISLLGMNSNESSFLHYLVEVWSIFYLEILPYIEA 198
Query: 642 EVLLLSY 662
L +++
Sbjct: 199 TFLPVTF 205
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 1007 IXFHLQLLDLAYKAELASTINWTSXXAHFTFVV 909
+ FHLQ L + A+T NW + A+ F++
Sbjct: 297 VAFHLQNLSNLSRNHPATTSNWRTLPAYIQFLI 329
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 752 KHLLLVSNGNRWSMRFCNRILYF 820
KH+ NGN ++ CN ILYF
Sbjct: 141 KHVTYSPNGNFLAVSSCNGILYF 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,348,093
Number of Sequences: 5004
Number of extensions: 96388
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -