Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C19
         (1276 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003501-1|AAO39505.1|  337|Drosophila melanogaster RE40567p pro...   334   2e-91
AE014297-729|AAF54215.1|  337|Drosophila melanogaster CG9620-PA ...   334   2e-91
BT003539-1|AAO39543.1|  373|Drosophila melanogaster RE05288p pro...    53   7e-07
AE014298-3170|AAF50956.1|  373|Drosophila melanogaster CG14621-P...    53   7e-07
AY119104-1|AAM50964.1| 1151|Drosophila melanogaster RE07981p pro...    31   4.5  
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    31   4.5  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    31   4.5  

>BT003501-1|AAO39505.1|  337|Drosophila melanogaster RE40567p protein.
          Length = 337

 Score =  334 bits (820), Expect = 2e-91
 Identities = 162/302 (53%), Positives = 221/302 (73%), Gaps = 5/302 (1%)
 Frame = +3

Query: 141  NKXLFSSQTVALEAPLFITWFQCIISFSICFTLSQ-NGGVPGIFSFPKGTPWSMDVMKKV 317
            NK L SS TV L APLF++WFQC++S  ICF  S+ +   P +F+FP+G P  +D  +K+
Sbjct: 36   NKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKI 95

Query: 318  IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 497
            +PL+++YTLMI  NNL L +V V FYY+GRSLTTVF+VV ++++LRQ TS +C+LCC  I
Sbjct: 96   LPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAI 155

Query: 498  IFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAY 677
            + GF+LGVDQE+L   FS  GTI+GV+ SL L+++SI TKK L YVNQEV LLSYYNN Y
Sbjct: 156  VVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLY 215

Query: 678  SIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHN 857
            S +LF+PL++INGE+  ++ Y +  +++FW  M + GLCGFAIG+ T+L+IKVTS LTHN
Sbjct: 216  STLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHN 275

Query: 858  ISGTAKAGAXTVIATQWYNE--SKMRXGGRPINSTSQFSFIRKIKQLEM--EVNQRXXAX 1025
            ISGTAKA A TVIATQ+Y++  S +      +   +  ++ R +KQLEM  +  QR  A 
Sbjct: 276  ISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTR-VKQLEMMRQHQQRSTAT 334

Query: 1026 KK 1031
            +K
Sbjct: 335  QK 336


>AE014297-729|AAF54215.1|  337|Drosophila melanogaster CG9620-PA
            protein.
          Length = 337

 Score =  334 bits (820), Expect = 2e-91
 Identities = 162/302 (53%), Positives = 221/302 (73%), Gaps = 5/302 (1%)
 Frame = +3

Query: 141  NKXLFSSQTVALEAPLFITWFQCIISFSICFTLSQ-NGGVPGIFSFPKGTPWSMDVMKKV 317
            NK L SS TV L APLF++WFQC++S  ICF  S+ +   P +F+FP+G P  +D  +K+
Sbjct: 36   NKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKI 95

Query: 318  IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 497
            +PL+++YTLMI  NNL L +V V FYY+GRSLTTVF+VV ++++LRQ TS +C+LCC  I
Sbjct: 96   LPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAI 155

Query: 498  IFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAY 677
            + GF+LGVDQE+L   FS  GTI+GV+ SL L+++SI TKK L YVNQEV LLSYYNN Y
Sbjct: 156  VVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLY 215

Query: 678  SIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHN 857
            S +LF+PL++INGE+  ++ Y +  +++FW  M + GLCGFAIG+ T+L+IKVTS LTHN
Sbjct: 216  STLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHN 275

Query: 858  ISGTAKAGAXTVIATQWYNE--SKMRXGGRPINSTSQFSFIRKIKQLEM--EVNQRXXAX 1025
            ISGTAKA A TVIATQ+Y++  S +      +   +  ++ R +KQLEM  +  QR  A 
Sbjct: 276  ISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTR-VKQLEMMRQHQQRSTAT 334

Query: 1026 KK 1031
            +K
Sbjct: 335  QK 336


>BT003539-1|AAO39543.1|  373|Drosophila melanogaster RE05288p
           protein.
          Length = 373

 Score = 53.2 bits (122), Expect = 7e-07
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 1/188 (0%)
 Frame = +3

Query: 315 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 494
           ++PLA+   L   T+++ L  V V + +  ++   +F VV + +   +   +   L    
Sbjct: 81  IVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLP 140

Query: 495 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNA 674
           II G  +    E    SF ++G I  ++ ++  S+ +IF+KKVL   N   L L +    
Sbjct: 141 IITGVGIATVTEI---SFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGK 197

Query: 675 YSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIG-GLCGFAIGYCTSLQIKVTSPLT 851
            S+ +F+PL L      V  +       Y    ++   G+  +         + + +PLT
Sbjct: 198 LSLFIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVLSLVTPLT 257

Query: 852 HNISGTAK 875
           + ++  +K
Sbjct: 258 YAVASASK 265


>AE014298-3170|AAF50956.1|  373|Drosophila melanogaster CG14621-PA
           protein.
          Length = 373

 Score = 53.2 bits (122), Expect = 7e-07
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 1/188 (0%)
 Frame = +3

Query: 315 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 494
           ++PLA+   L   T+++ L  V V + +  ++   +F VV + +   +   +   L    
Sbjct: 81  IVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLP 140

Query: 495 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNA 674
           II G  +    E    SF ++G I  ++ ++  S+ +IF+KKVL   N   L L +    
Sbjct: 141 IITGVGIATVTEI---SFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGK 197

Query: 675 YSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIG-GLCGFAIGYCTSLQIKVTSPLT 851
            S+ +F+PL L      V  +       Y    ++   G+  +         + + +PLT
Sbjct: 198 LSLFIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVLSLVTPLT 257

Query: 852 HNISGTAK 875
           + ++  +K
Sbjct: 258 YAVASASK 265


>AY119104-1|AAM50964.1| 1151|Drosophila melanogaster RE07981p
           protein.
          Length = 1151

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 308 HDVHTPRCSFWKGKYTRNSTILTQCKTN 225
           H+ H+P C F KG+YT+N  +     TN
Sbjct: 310 HERHSPLCPFVKGEYTQNVPLSITYATN 337


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
           ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 308 HDVHTPRCSFWKGKYTRNSTILTQCKTN 225
           H+ H+P C F KG+YT+N  +     TN
Sbjct: 310 HERHSPLCPFVKGEYTQNVPLSITYATN 337


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
           protein.
          Length = 4876

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 308 HDVHTPRCSFWKGKYTRNSTILTQCKTN 225
           H+ H+P C F KG+YT+N  +     TN
Sbjct: 310 HERHSPLCPFVKGEYTQNVPLSITYATN 337


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,557,492
Number of Sequences: 53049
Number of extensions: 977958
Number of successful extensions: 2271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6865736385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)