Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C19
         (1276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    29   0.11 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   1.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   7.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 221 LNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGN--NVYFDDS 352
           +N++YI    W+ +Y F+S R+ L +G      +T N  N Y  DS
Sbjct: 73  MNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDS 118


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 661 YDNNNTSWLTYGKTFFVNIEYKDSMREP 578
           Y+N N ++  Y K  + NI Y + +  P
Sbjct: 94  YNNYNNNYNNYNKKLYYNINYIEQIPVP 121


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 661 YDNNNTSWLTYGKTFFVNIE 602
           Y+NNN +   Y K + +NIE
Sbjct: 106 YNNNNYNKKLYYKNYIINIE 125


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 539 RVIFPYRNNLWSGWFP 586
           R + PY + +W+ W P
Sbjct: 463 RTMHPYDHLVWNSWMP 478


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +2

Query: 209 YNFILNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGN 331
           YN+ +N      +W    ++ + K N +    +   + TGN
Sbjct: 57  YNYTMNYLLDTDQWGDKTFVIIMKFNGVPSSLNVITNKTGN 97


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 759 YFWFQMVIGGLCGFAIGYC 815
           Y W+  V+G LCG +   C
Sbjct: 524 YPWWSHVLGWLCGLSSMLC 542


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 759 YFWFQMVIGGLCGFAIGYC 815
           Y W+  V+G LCG +   C
Sbjct: 577 YPWWSHVLGWLCGLSSMLC 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,908
Number of Sequences: 438
Number of extensions: 6675
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43702932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)