Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C18
         (1302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    42   1e-04
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    38   0.003
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    31   0.46 
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    30   0.61 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    28   3.3  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   5.7  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    27   7.5  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    26   9.9  

>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +1

Query: 802 EDGLNLLRSAANRDHAPALYNLGLCYEMGLGVSVNXKMAMELYKSXXXXHHQGALYXWGI 981
           ++   L + AA+ +H  A Y + +C +MG GV+ N + A+  +       H GA++   +
Sbjct: 246 KEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAIHYFFRAASGQHVGAMHRMAL 305

Query: 982 NYGQG 996
            Y +G
Sbjct: 306 IYFRG 310


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 811 LNLLRSAANRDHAPALYNLGLCYEMGLGVSVNXKMAMELYKSXXXXHHQGALY---XWGI 981
           +N    AA R+H  +L  +G  Y MGLG S   ++A   Y      H     Y    W  
Sbjct: 478 MNYYSRAAARNHIHSLIKIGDFYRMGLGTSAKPELAFSYYSQAAAIHPSALAYWRLGWMH 537

Query: 982 NYGQG 996
            YG G
Sbjct: 538 EYGVG 542


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +1

Query: 775  LAAIENGHYEDGLNLLRSAANRDHAPALYNL---GLCYEMGLGVSVNXKMAMELYKSXXX 945
            L  I  G+Y   +N+LR     + AP+       G  Y MGL +  N    +  Y     
Sbjct: 390  LGVIHRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFYAMGL-IHANHGRGVTEYLREQL 448

Query: 946  XHHQGALYXWGINYGQGRGG 1005
             H +  +  +G+  G G  G
Sbjct: 449  KHTEDEIVQYGLLLGIGLTG 468


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 769 LGLAAIENGHYEDGLNLLRSAANRDHAPALYNLGLCYEMGLGVSVNXKMAMELYK 933
           LGL  +E   YE+  +L   AA +    +   L  CY  G G S +   A   YK
Sbjct: 416 LGLIRLEEARYEEAYHLFLRAATQKSVISYKYLADCYYNGTGTSRSMISASLYYK 470


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 829 AANRDHAPALYNLGLCYEMGLG 894
           AA   HAPA Y LG  YE G+G
Sbjct: 397 AAMLGHAPACYVLGKFYETGVG 418


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 433 SKFCAQNSIVCCLSRHXYTSSSIYKMKTNEMEY 335
           S+F A  S++C L RH    SSI       M Y
Sbjct: 8   SRFSANQSVLCLLQRHRVFFSSISVKPRKRMVY 40


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 431 QVLCSKFHRLLFVPSXLHELKHL*DENQRDGVHRLFXSDELE 306
           Q L  + + L F+ S L+E +HL +EN +      F S+E+E
Sbjct: 89  QRLYDESNSLGFISSPLNETEHLSEENLKIESSITFTSEEIE 130


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 733 DLGQV-LNSIENQLGLAAIENGHYE 804
           D G + L S +N + +  IENGH+E
Sbjct: 130 DCGDIPLTSYDNAVAIKQIENGHFE 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,880
Number of Sequences: 5004
Number of extensions: 62019
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)