Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C16
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    54   5e-08
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   7.2  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    27   7.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.5  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
 Frame = +1

Query: 340 AMXPLLXLAQRQXGGWLPISAMHKVAEXLNLPKMXVYEVATFY-TMFIRRPIGKYHVQVC 516
           A+ PLL LAQRQ G W+P +AM+++A    +    V+ +   Y   F  RP  K  V++C
Sbjct: 30  ALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVHSLILAYPNDFFWRP-KKPRVRIC 88

Query: 517 TTTPCWLRGSDAILNAIKQETNCEVGGNSPCGK--FSVSEVECLGACVNAPMIQVNDDYY 690
            +  C     +      +  +N +    S   K  F V    CLG C   P + +ND  Y
Sbjct: 89  NSWMCQQAAEE------QGNSNWDSQCRSVATKYGFDVENTGCLGNCFQGPAMWINDKIY 142

Query: 691 EDLSVEDTKEIISKL 735
              + E   +I+  L
Sbjct: 143 GVNTKEKLVDIMEAL 157


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 514 CTTTPCWLRGSDAILNAIKQETNCEVGGN 600
           C T   W+ G  A+  A   + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 270 CSQANQKRVXALLAIYPVRSQAXCHXSFTGS 362
           C  A+ K+V A+L ++P   Q     SF+G+
Sbjct: 77  CKTASAKKVTAVLPVFPYSRQPDQKFSFSGA 107


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 662 GAFTQAPKHSTSETENFPQGLLPPTSQFVSCLIAFNMASE 543
           GA  +A +HS S ++++P+G L    +  S  +A ++A E
Sbjct: 439 GAAAEAAEHSGSGSDSYPEGPLATIPESDSESMASDLAGE 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,354
Number of Sequences: 5004
Number of extensions: 54642
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)