Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C16
         (1261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...   146   4e-35
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693...    36   0.089
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603...    29   7.7  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score =  146 bits (353), Expect = 4e-35
 Identities = 82/207 (39%), Positives = 116/207 (56%), Gaps = 12/207 (5%)
 Frame = +1

Query: 229 HRATPAANPXSPLS-ARRPIKSAXRLCWPFTL*GHKRGAMXPLLXLAQRQXGGWLPISAM 405
           H  +P  NP  P       +K    +   +    +K+  + P+L LAQ+Q GGW+P++AM
Sbjct: 35  HLDSPENNPDMPWEFTEANMKKVNEILSHYPS-NYKQSGIIPMLDLAQQQHGGWVPVAAM 93

Query: 406 HKVAEXLNLPKMXVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNC 585
           + +A+ + +  + VYEVATFYTMF R  +GKYH+ VC TTPC +RGS  I  A+ +    
Sbjct: 94  NAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSREIEEALLEHLGV 153

Query: 586 EVGGNSPCGKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKEIISKL 735
           +    +  G FSV E+EC+G CVNAPMI V D          +YYEDL+ +   EI+  L
Sbjct: 154 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 213

Query: 736 KKDEKPKPGPR-SGRFASEPLGGLTSL 813
           K+ E P  G +   R    P GG T+L
Sbjct: 214 KRGETPPRGTQHPERKNCGPAGGNTTL 240


>05_05_0336 +
           24167891-24167982,24168501-24168600,24169216-24169375,
           24170119-24170566,24171020-24171095,24171204-24171250,
           24171345-24171528
          Length = 368

 Score = 35.5 bits (78), Expect = 0.089
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 562 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKL 735
           A+K     EV G+ P G F   + +     +  P I +ND Y  +E    ED +E+  +L
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRL 288

Query: 736 KKDE 747
           +++E
Sbjct: 289 EEEE 292


>11_01_0730 -
           6037375-6037509,6037892-6038019,6038339-6038423,
           6038525-6038614,6040015-6040113,6040207-6040335,
           6041341-6041463,6041549-6041711,6042331-6042380,
           6042593-6042706,6042993-6043199,6043275-6043412,
           6044708-6044770,6044845-6044928,6045014-6045094,
           6045212-6045363,6045479-6045614,6045991-6046107
          Length = 697

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 502 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 606
           H+  C +TP W R SD  LN   KQ+ + E G  +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,879,909
Number of Sequences: 37544
Number of extensions: 402372
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)