Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C15
         (1260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   1.8  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    29   1.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   2.4  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   7.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   7.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   9.5  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   9.5  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   9.5  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 246 LLKSFTDKYGDVFRVHFFSYPYVLISHPKYAEALVSSADLITK-GRSYSFLKA 401
           LLK F D YGD+    F    Y +   PK     V    LI+  G  Y+ LK+
Sbjct: 426 LLKCFFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTLISSFGVGYTQLKS 478


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +3

Query: 600 ALDNVAESIMGVSVNAQQNSESEYVRAIETLSQITTLRMQIPLLGEDFIFNLTSYKKKQN 779
           ++D+   + +G      Q +   Y +A+ETL Q+ + +    LLG+            ++
Sbjct: 117 SIDDFQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEH 176

Query: 780 IALEVVHGQTKKVIEARRCELEKNNKTNI 866
           I +  +   T K IE+   ELE+ + T +
Sbjct: 177 IIIPRLE-NTIKYIESELEELEREDFTRL 204


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 880 SLVPLIFVLLFFSSSQRLASITFFVCPCTTSKAIF 776
           S + LIF LLFF+S+ R +S++     C     I+
Sbjct: 3   SYISLIFTLLFFTSAARSSSVSVETGSCVRYTTIY 37


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 435 PRWRLHRKFLTPAFHFNILQNFLPVFCKNSEILRDKIRRLADGQPI 572
           P+WRL ++  TP   +   +NF+ +  K    L ++     D  P+
Sbjct: 2   PKWRLTKEDFTPKGMWRNFKNFIVIEAKPGTTLAERFLTNEDLYPV 47


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 240  LGLLKSFTDKYGDVFRVHFFSYPYVLIS 323
            LGL  S+T+KY  ++ +  FS PY++I+
Sbjct: 2130 LGL--SYTEKYPGIYHIEIFS-PYIIIN 2154


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 291 HFFSYPYVLISHP 329
           HF+SYP+  + HP
Sbjct: 172 HFYSYPFFFVDHP 184


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 901 CLFFIPYSLVPLIFVLLFFSSSQRLASITFFVC 803
           C FF+ + L+ L+F  +F  S +R   +T  VC
Sbjct: 44  CHFFV-FFLLTLVFYWVFDLSRRRATQLTILVC 75


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 314 INIPSKVCRGFGFKCRFDNKRTIVLI 391
           I++ + +C+G+GF C  + K  ++ I
Sbjct: 329 IDMETNLCKGYGFACFEEEKSALICI 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,709,815
Number of Sequences: 5004
Number of extensions: 99567
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)