Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C14
         (1336 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   9.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 211 YSDLIIFFKVAGCYTKVASFTFSTIHMHLNLCIISFFNFFLPF 83
           Y  ++  F +   Y    +F   T+H+   LCI  FF  F+ F
Sbjct: 134 YYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIF 176



 Score = 22.2 bits (45), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 120 CA*YLS--LIFFCLFIMET*HYSLACL*IY 37
           C+ Y +  L+F+C FI+ T H+ L     Y
Sbjct: 75  CSGYFTVHLLFYCPFIIFTVHFLLCTYYFY 104


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 549 GXPXPHXXXPPXGXXPP 599
           G P  H   PP G  PP
Sbjct: 59  GIPPHHYGGPPSGGQPP 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,991
Number of Sequences: 336
Number of extensions: 3830
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 39562985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)