Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C14
(1336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 36 0.072
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 32 1.2
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 31 1.6
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 31 2.7
07_03_1136 + 24218601-24218734,24218769-24219906 31 2.7
05_01_0142 - 940421-940701,941262-941574 30 3.6
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 29 8.3
05_01_0141 - 937428-937717,938483-938705 29 8.3
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 29 8.3
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 29 8.3
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 35.9 bits (79), Expect = 0.072
Identities = 25/87 (28%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = -3
Query: 794 PPPPXG---GGGXXXXXXXXXPPPXXXXXXKKRXXXXXXXXPGXXGXXXXXGAPXXPXXX 624
PPPP G G PPP G P P
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP 361
Query: 623 XXPXPSXGGGXPPPXGXXSVGGXXPPP 543
P P G G PPP G GG PPP
Sbjct: 362 RPPGP--GPGPPPPPGAAGRGGGGPPP 386
Score = 33.1 bits (72), Expect = 0.51
Identities = 24/84 (28%), Positives = 24/84 (28%)
Frame = -1
Query: 793 PPPPXGGGGXXXXXXPXXPPPRXXXXKKKXXXXGXXXXXGXXGXXXXXGPPXXPXXXXFX 614
P PP G G P PPP G PP P
Sbjct: 307 PLPPGAGAGAGTGAPP--PPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPR-- 362
Query: 613 PPXXGGGXXPXGGFXXWGXGXPPP 542
PP G G P G G G PPP
Sbjct: 363 PPGPGPGPPPPPGAAGRGGGGPPP 386
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 1.2
Identities = 29/97 (29%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Frame = -3
Query: 812 GXXXXXPPPPXGGGGXXXXXXXXXPPPXXXXXXK---KRXXXXXXXXPGXXGXXXXXGAP 642
G PPPP GG G PPP P G G P
Sbjct: 1144 GIGGVPPPPPVGGLGGPPAP----PPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
Query: 641 XXPXXXXXPXPSXG-GGXPPPXGXXSVGGXXPPPXGG 534
P P P GG PPP G G P P GG
Sbjct: 1200 TPPGAPAPPMPPGVPGGPPPPPG----GRGLPAPPGG 1232
Score = 30.7 bits (66), Expect = 2.7
Identities = 25/100 (25%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Frame = -3
Query: 812 GXXXXXPPPPXGGGGXXXXXXXXXPPPXXXXXXKKRXXXXXXXXPGXXGXXXXXGAPXXP 633
G PPPP GG PPP + G G
Sbjct: 1105 GAGAPPPPPPPGG------ITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLG 1158
Query: 632 XXXXXPXPSX-GGGXPPPXGXXSVGGXXPPPXGGXXXXAP 516
P P+ GG PPP V PPP G P
Sbjct: 1159 GPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 517 GAXXXXPPXGGGXXPPTDXXPXG--GGXPPPXEGXG 618
G PP GG PP P G GG PPP G
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGG 1181
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -3
Query: 617 PXPSXGGGXPPPXGXXS--VGGXXPPPXGG 534
P PS G G PPP G PPP GG
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVPPPPPIGG 1129
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -3
Query: 647 APXXPXXXXXPXPSXGGGXPPPXGXXSVGGXXPPPXGGXXXXAP 516
AP P P P G PPP PPP GG P
Sbjct: 335 APPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 544 GGGXXPPTDXXPXGGGXPPPXEGXGXXXFXGXXGA 648
G G PPT GGG PPP G F G A
Sbjct: 425 GVGAPPPTGQQGYGGGVPPPTCSGGHTGFGGNNSA 459
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 602 GGGXPPPXGXXSVGGXXPPP 543
G G PPP G GG PPP
Sbjct: 425 GVGAPPPTGQQGYGGGVPPP 444
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 30.7 bits (66), Expect = 2.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 544 GGGXXPPTDXXPXGGGXPPPXEGXGXXXFXG 636
G G PPT GGG PPP G F G
Sbjct: 425 GVGAPPPTGQQGYGGGVPPPTCSGGHTGFGG 455
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 602 GGGXPPPXGXXSVGGXXPPP 543
G G PPP G GG PPP
Sbjct: 425 GVGAPPPTGQQGYGGGVPPP 444
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -3
Query: 617 PXPSXGGGXPP--PXGXXSVGGXXPP-PXGGXXXXAP 516
P GGG PP P G GG PP P GG AP
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
Score = 29.9 bits (64), Expect = 4.7
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +1
Query: 517 GAXXXXPPXGGGXXPPTDXXP---XGGGXPPPXEGXGXXXFXGXXGAP 651
G PP GGG P P GGG PP G G G GAP
Sbjct: 102 GGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGG-----GGGGAP 144
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 3.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 525 GXXPPXGGGXPXPHXXXPPXGXXPPP 602
G PP G P P PP G PPP
Sbjct: 39 GYPPPPGAYPPPPGAYPPPPGAYPPP 64
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -3
Query: 635 PXXXXXPXPSXGGGXPPPXGXXSVGGXXPPPXG 537
P P P G PP G S G PPP G
Sbjct: 45 PQSGPYPYPPPSGAVYPPQGYPSSHGVYPPPQG 77
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -3
Query: 677 GXXGXXXXXGAPXXPXXXXXPXPSXGGGXPPPXGXXSVGGXXPPPXGGXXXXAP 516
G G G P P P P PPP G GG PP G AP
Sbjct: 20 GVAGGGGGHGYPYPPQQGYYPPPPTAYPPPPPAGYG--GGYGYPPAGYPGSSAP 71
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 602 GGGXPPPXGXXSVGGXXPPP 543
G G PPP G GG PPP
Sbjct: 314 GVGAPPPTGQQGYGGGVPPP 333
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 602 GGGXPPPXGXXSVGGXXPPP 543
G G PPP G GG PPP
Sbjct: 302 GVGAPPPTGQQGYGGGVPPP 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,295,858
Number of Sequences: 37544
Number of extensions: 634686
Number of successful extensions: 2117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4190274720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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