Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C14
         (1336 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   2.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   6.5  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    24   8.6  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 534 PPXGGGXPXPHXXXPPXGXXPPPXXGG 614
           PP G G         P G  PPP  GG
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPPPPPPGG 538



 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 812 GXXXXXPPPPXGGGGXXXXXXXXXPPP 732
           G     PPPP  GG          PPP
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPPQFLPPP 551


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 518 GPGXXPPXXGGXPXPPXXKXPXGXGPPPXXRGXE 619
           GP   P    G P  P  K P G   P   +G +
Sbjct: 398 GPAGAPGGGEGRPGAPGPKGPRGYEGPQGPKGMD 431


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP protein.
          Length = 151

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 1186 GXPXXXPXXXXPXXXXPPPXGGXXPP 1263
            G P   P    P    PPP  G  PP
Sbjct: 94   GMPGAPPLLMGPNGPLPPPMMGMRPP 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,121
Number of Sequences: 2352
Number of extensions: 15505
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 153210915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)