Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C13
         (1347 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4AC1 Cluster: PREDICTED: similar to conserved ...    37   1.0  
UniRef50_P23246 Cluster: Splicing factor, proline- and glutamine...    36   3.2  

>UniRef50_UPI00015B4AC1 Cluster: PREDICTED: similar to conserved
            hypothetical protein; n=1; Nasonia vitripennis|Rep:
            PREDICTED: similar to conserved hypothetical protein -
            Nasonia vitripennis
          Length = 1110

 Score = 37.1 bits (82), Expect = 1.0
 Identities = 37/159 (23%), Positives = 44/159 (27%), Gaps = 5/159 (3%)
 Frame = -3

Query: 1000 PXXGGXXXPRXGKPXXGXXXKXXXXXPREKG-GXXXXXTARXGKXXGXXGGFXGGKPXNF 824
            P  GG      G P  G   +     P   G G      +  G      G   GG P + 
Sbjct: 436  PPHGGPPPQHGGPPHGGPPPQHGGPPPPHSGIGQQHGGHSLDGPPHDRGGPLYGGSPHDG 495

Query: 823  XXPXXGXPPXNXGXIF*KFXRGGG--PXXKXPQTXXXXXXXXXGXLGXKXFSGXXPXXGG 650
              P  G PP + G  +      GG  P    P                  + G  P  GG
Sbjct: 496  VPPFGGPPPHDGGPPYRGSHHDGGGPPYGGPPHEGGGQPYGGPPPHDGPPYGGPPPHHGG 555

Query: 649  KP--XXPPXGXENXSPXPXXRGQGXXXGGXGXGPKXXTP 539
             P    PP G  +    P  RG        G  P    P
Sbjct: 556  PPPHGSPPHGGMSHGDYPPHRGPPHSGSPHGGPPHGGPP 594


>UniRef50_P23246 Cluster: Splicing factor, proline- and
            glutamine-rich; n=81; Eumetazoa|Rep: Splicing factor,
            proline- and glutamine-rich - Homo sapiens (Human)
          Length = 707

 Score = 35.5 bits (78), Expect = 3.2
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -1

Query: 1035 PXXXXXGVXXTPPXXGGXPXPXXENXXXGXXXKXPPXPQGKKGXXXP 895
            P     GV  TPP  GG P P       G   K  P P G KG   P
Sbjct: 167  PTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP 213


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,917,461
Number of Sequences: 1657284
Number of extensions: 9105001
Number of successful extensions: 7632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7456
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 139703181855
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)