Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C13
         (1347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    29   7.5  

>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = -1

Query: 987 GXPXPXXENXXXGXXXKXPPXPQGKKGXXXPXKXXGXEKXXAXXGXXXGENPGIXXXPXG 808
           G P P  E    G   + P  PQG  G   P    G +      G   GE  G    P  
Sbjct: 234 GPPGPRGEAGLDGGNSEGPQGPQGDAGRPGPVGEQGPQGPEGPQG-PPGEPGGCEHCPIP 292

Query: 807 VXPP 796
             PP
Sbjct: 293 RTPP 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,146
Number of Sequences: 27780
Number of extensions: 247674
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3788030792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)