Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C12
(1332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 135 6e-32
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 111 2e-24
01_01_0271 + 2243496-2243500,2245011-2245061,2245174-2245322,224... 109 5e-24
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 108 1e-23
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299... 101 1e-21
04_04_0515 - 25829298-25829750,25829822-25829944,25831294-258314... 93 4e-19
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 6.3
10_01_0113 + 1410151-1411416 29 8.3
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 135 bits (327), Expect = 6e-32
Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 32/240 (13%)
Frame = +2
Query: 353 FLPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWV 532
F+P+G+P SV+ Y +Q+WDT Q + I L+TQ +L +GVG+ +AT + AT W
Sbjct: 147 FVPEGFPGSVTPDYVPFQMWDTLQGLSTYIRAMLSTQALLGAIGVGEKSATVIGATFQWF 206
Query: 533 IKDGCG-----------------------HLGRILFAFTR-----GTCLDAYSKKWRLYA 628
++D G HL I FT G+ LD+ +K WRL A
Sbjct: 207 LRDLTGMLGGILFTFYQVSNSLANSNRQCHLIAIDSLFTDEITCLGSNLDSNAKMWRLVA 266
Query: 629 DILNDAAMCIEIALPYFKNYTTVVLCVSTVMKAIVGVSGGATRAAMTQHHAVRGNMADVS 808
D +ND M +++ P F + V++C+ ++ ++ GV+ GATRAA+TQH A+ N AD+S
Sbjct: 267 DFMNDLGMLMDLLSPLFPSSLIVIMCLGSLSRSFTGVASGATRAALTQHFALANNAADIS 326
Query: 809 AKDSAQETAVNLXASFTAXFIISVLGSNAF----IFVFIMMLHIAFNYXAVXAVXLRTMN 976
AK+ +QET + + V +A F+ + + H+ NY AV ++ L T+N
Sbjct: 327 AKEGSQETLATMLGMGLGMLLAHVTRGHALGVWVSFLSLTIFHMYANYKAVQSLSLTTLN 386
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 111 bits (266), Expect = 2e-24
Identities = 62/211 (29%), Positives = 104/211 (49%)
Frame = +2
Query: 356 LPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 535
+P+G+PDSV+ Y Y W + F G T+ +L VGV + AT A + W++
Sbjct: 137 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVAINWIL 196
Query: 536 KDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCVST 715
KDG G +G++LFA +G D K+ R D+L + IE+A F + C++
Sbjct: 197 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSGDLLMELGAGIELATAAFPQLFLPMACIAN 255
Query: 716 VMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASFTAXFIISVLGSNA 895
V+K + V+ +TR + + +A N+ DV+AK + +L + + I S
Sbjct: 256 VVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGTGLSILISKRNPSLV 315
Query: 896 FIFVFIMMLHIAFNYXAVXAVXLRTMNEPKF 988
F F+ ++ +Y V +V L T+N +F
Sbjct: 316 TSFAFLSCGYLLSSYHEVRSVVLNTLNTARF 346
>01_01_0271 +
2243496-2243500,2245011-2245061,2245174-2245322,
2245870-2245970,2246327-2246385,2246763-2246809,
2246952-2247030,2247139-2247211,2247294-2247413,
2247685-2247744,2247881-2247994,2248921-2249016,
2249094-2249333
Length = 397
Score = 109 bits (262), Expect = 5e-24
Identities = 70/226 (30%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Frame = +2
Query: 356 LPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT---VT 526
LP G+P SVS Y Y LW I TL T +L+ VGVG T T AA+ +
Sbjct: 63 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAASAAAIR 122
Query: 527 WVIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLC 706
WV KDG G GR+L GT D KKWR+YAD + A E+ P + Y +
Sbjct: 123 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLAS 182
Query: 707 VSTVMKAIV-------GVSGG---ATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASF 856
+ + K I+ V G + + H A GN+ +V+AK+ E L
Sbjct: 183 LGNLAKKIIDSGLLKQAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLS 242
Query: 857 TAXFIISVLG------SNAFIFVFIMMLHIAFNYXAVXAVXLRTMN 976
FI+ G + A ++ + +LH+ F Y ++ + RT++
Sbjct: 243 IGVFIMDTSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFRTVD 288
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 108 bits (259), Expect = 1e-23
Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 20/229 (8%)
Frame = +2
Query: 350 VFLPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 529
+ LP GYPDSVS Y Y LW Q S I+G L+TQ +L VG+G A P AA V W
Sbjct: 195 LLLPDGYPDSVSSDYLQYSLWRGVQGIASQISGVLSTQALLYAVGLG-KGAIPTAAAVNW 253
Query: 530 VIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPYF---------- 679
V+KDG G+L +IL + G D K WRL+AD+L + A +EI P F
Sbjct: 254 VLKDGLGYLSKILLS-KFGRHFDVNPKGWRLFADLLENTAYGLEILTPVFPHLFVPIGAA 312
Query: 680 ----KNYTTVVLCVST--VMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVN 841
++ ++ + T +++ + ATR+ AV+ N A+V AK AQ
Sbjct: 313 AGAGRSAAALIQTIFTHFMLENANHMRKAATRSCFYAGFAVQRNFAEVIAKGEAQGMVSK 372
Query: 842 LXASFTAXFIISVLGSNAFI----FVFIMMLHIAFNYXAVXAVXLRTMN 976
+ + +GS+ + F + +H+ N + ++ LRT+N
Sbjct: 373 FLGIMLGIALANRIGSSVSLALISFAGVTAVHMYCNLKSYQSIQLRTLN 421
>01_06_1597 +
38528241-38528588,38529623-38529721,38529814-38529927,
38530349-38530420,38530520-38530630,38530738-38530857,
38531541-38531613,38531997-38532077,38532167-38532231,
38532383-38532484,38532571-38532744,38532873-38532938
Length = 474
Score = 101 bits (242), Expect = 1e-21
Identities = 53/166 (31%), Positives = 87/166 (52%)
Frame = +2
Query: 356 LPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 535
+P+G+PDSV+ Y Y W + F G T+ +L VGV + TP A + W++
Sbjct: 127 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLSSVGVSQSKVTPGAIAINWIL 186
Query: 536 KDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCVST 715
KDG G +G++LFA +G D K+ R +D+L + IE+A F + + CV+
Sbjct: 187 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSSDLLLEIGAGIELATAAFPQFFLPMACVAN 245
Query: 716 VMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXAS 853
V+K + V+ +TR + + +A N+ DV+AK + +L S
Sbjct: 246 VVKNVAAVTSTSTRTPIYKAYARGENIGDVTAKGESVGNIADLVRS 291
>04_04_0515 -
25829298-25829750,25829822-25829944,25831294-25831473,
25831687-25831784,25831914-25832007,25832090-25832149,
25832350-25832434,25832513-25832562
Length = 380
Score = 93.1 bits (221), Expect = 4e-19
Identities = 54/168 (32%), Positives = 80/168 (47%)
Frame = +2
Query: 341 FTXVFLPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT 520
F F P GYP SV+ Y Y + Q F S + L+TQ +L G+ T A A
Sbjct: 5 FLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQ--ATA 62
Query: 521 VTWVIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVV 700
V+W++KDG H G+++ + G +D+ K WR+ AD+L D +E+ P V
Sbjct: 63 VSWILKDGMQHAGKLICS-GMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEV 121
Query: 701 LCVSTVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNL 844
K + V+ ATR + A GN++D+ AK A T N+
Sbjct: 122 AGFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNV 169
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 6.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 736 SFRWCHKSSYDATPCSKRQHGRC 804
++++C K Y+ATPCS+R G+C
Sbjct: 430 AWKFCGKKLYEATPCSQR--GKC 450
>10_01_0113 + 1410151-1411416
Length = 421
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 777 WCCVIAALVAPPETPTIAFITVLTHSTTVV*FLKYGRAISIHIAAS 640
W C +++ P+ PT+ ITV + V YG ++H+A +
Sbjct: 255 WRCRTRVVMSDPDAPTVLAITVNSRKHVGVKDGYYGNCATVHMAVA 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,548,160
Number of Sequences: 37544
Number of extensions: 455081
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4178635068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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