Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C12
         (1332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical...    32   1.0  

>AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical
           protein C17H12.5 protein.
          Length = 443

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 33/144 (22%), Positives = 56/144 (38%)
 Frame = +2

Query: 317 KLNYFRXWFTXVFLPKGYPDSVSRXYSAYQLWDTAQAFCSTITGTLATQEVLRGVGVGDT 496
           K++  R  +T   LP G+ +SV      +  W+ +         T +  +V+  V     
Sbjct: 283 KMDEERTRYTIEVLPNGFSNSVMMNVYVHTGWEASGVPVRYANTTRSVVDVMNFVKTSSG 342

Query: 497 TATPLAATVTWVIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALPY 676
           T   L      V K+GCG  G  L       CL+  S+  R+  +I+         A+  
Sbjct: 343 TEKMLV-----VSKNGCGRAGFFLSLGAAFCCLNDNSEP-RI-GEIVKAIRSQRPNAVDS 395

Query: 677 FKNYTTVVLCVSTVMKAIVGVSGG 748
            K Y ++ LC    +K  + +  G
Sbjct: 396 IKQYASIYLCFVYYIKKKITIPEG 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,770,850
Number of Sequences: 27780
Number of extensions: 399030
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3735997402
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)