Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C11
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    29   1.0  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    27   4.2  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   9.7  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   9.7  

>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 692 IKTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERV-SIQNG 516
           +KT  +  ++ +S       SS  RQF  T  S + V + + S+ T    FER+  +  G
Sbjct: 68  MKTKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNIVVVKIDSKLTEEEEFERLDKLVEG 127

Query: 515 WGIELSRSHLRKTV 474
             +E S   L+K +
Sbjct: 128 NRVEFSDEELQKLI 141


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 526 IETLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEE 633
           +ET+ KF RL V  L  + TD+ +N  G++ +  EE
Sbjct: 242 LETIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEE 277


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 832 NELPRLEELRIESCDIGSTLIG 897
           N LP+ E++++  CD+  TL+G
Sbjct: 13  NVLPKPEDIQLIICDVDGTLLG 34


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 758 IARIRKSFNGAIE-YKPASDTFLIKTDALKRDLYIS 654
           I + +K +  A++ +KP +D  ++ T+ LK+DL  S
Sbjct: 77  ILQKQKGYLAAVQSFKPDTDVLMLTTNLLKKDLMSS 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,789,728
Number of Sequences: 5004
Number of extensions: 73060
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)