Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C11
         (1275 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.35 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   5.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   7.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   7.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   9.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   9.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 442 IQLHVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVV 561
           I  H+ THPN+T + +C   N+ P      T S F  +++
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMM 212


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 485 ANAISITQYPNHSGSKLSRNSVVLSFSTSNSYAQTKYST 601
           +N  S +Q    SGS +SRNS   + S S+ Y   + ST
Sbjct: 18  SNTCSNSQSQRSSGSSISRNS---NRSESSGYCGRRPST 53


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 485 ANAISITQYPNHSGSKLSRNSVVLSFSTSNSYAQTKYST 601
           +N  S +Q    SGS +SRNS   + S S+ Y   + ST
Sbjct: 18  SNTCSNSQSQRSSGSSISRNS---NRSESSGYCGRRPST 53


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 673 KEICIYQLSRLCLVPRE 623
           KE+C+ Q +R C++ ++
Sbjct: 34  KEVCVLQANRACILIKD 50


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 673 KEICIYQLSRLCLVPRE 623
           KE+C+ Q +R C++ ++
Sbjct: 17  KEVCVLQANRACILIKD 33


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 478 VFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEE 633
           + R+C +DN+  +   + T  KFSR V+  +KF  T  +++    N    EE
Sbjct: 97  IIRQC-VDNAKNEDKCL-TAQKFSRCVIDYVKFHITQYMISNANSNTTSEEE 146


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 333 KKSIFIEMPPDDCFTMQVIRCPLFRTNM 416
           ++   +  PP    TM+V++  LF TN+
Sbjct: 897 QRGTVVSPPPTKRRTMKVVKYHLFLTNL 924


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 333  KKSIFIEMPPDDCFTMQVIRCPLFRTNM 416
            ++   +  PP    TM+V++  LF TN+
Sbjct: 935  QRGTVVSPPPTKRRTMKVVKYHLFLTNL 962


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,653
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43702932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)