Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C10
         (1255 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    25   1.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   4.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   4.8  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
 Frame = +2

Query: 353 EELNSD---KTLKPVKSV 397
           EELN+D   KTLKPVK V
Sbjct: 130 EELNNDQFLKTLKPVKKV 147


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +2

Query: 545 PRWYVLEKCGKITQTTCLILEGV--------SVKHLENYYEDLTCLKTIFNHTVEVLTPS 700
           PRWY+    G I    CL +  +        S  +   +  D+  + T+ + ++ ++  +
Sbjct: 38  PRWYICYTIGVIITIGCLCIWSIFNKWNQFRSYSNFSVFLFDIITIVTLTSTSILLIVNA 97

Query: 701 VYNGSLVQELALVPLTEL-EKESLIQKYGSMNL 796
           V+         L+ L+E+ E   L +K   +++
Sbjct: 98  VFVKEKRIRTLLIKLSEIKENTRLAEKQARISI 130


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 930 CPADRISCVLGNLSLH 883
           CP  +  C + N+SLH
Sbjct: 12  CPVKKRKCTVSNVSLH 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,345
Number of Sequences: 336
Number of extensions: 4908
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36788438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)